CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PDK_20s1689851g001
(
Phoenix dactylifera
)
TCP
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03634 (TCP)
IPR005333
PDK_20s1689851g001
T345139_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PK12240.1
M01314_2.00
Cannabis sativa
GGGSCCMS
SKGGSCCC
PBM
Lambert et al.(2019)
pTH10180
0.866
0.379
For this family, TFs with SR scores >
0.822
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PDK_20s1689851g001
TCP
5
144
RREASKIFTAQGLRDRRMRLSQEVASKFFNLQDLLGFDKASQTVDWLLTQSKSAIQQLIDASQLENNSINLSSFVRESSTSECFSAISNDKQKSAAASSKAKDIGLQPLSIATLDRTLTKEMRAKARARARERTREKKRI
Links
Other
TCP
family TFs
Other
Phoenix dactylifera
TFs
78 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
GATA23
Arabidopsis lyrata
Al_scaffold_0006_2616
N
GATA23
Arabidopsis thaliana
AT5G26930
N
Bostr.29827s0125
Boechera stricta
Bostr.29827s0125
N
Bra009926
Brassica rapa
Bra009926
N
Cagra.0418s0011
Capsella grandiflora
Cagra.0418s0011
N
Carubv10003065m.g
Capsella rubella
Carubv10003065m.g
N