LIN54 (Macaca mulatta)
TCR/CxC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03638 (TCR) IPR005172 ENSMMUG00000008514 T345305_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LIN54
M02527_2.00 		Gallus gallus
NRTTYAAAH
DTTTRAAYN		 PBM
Weirauch et al.(2014)
pTH8566 		0.672 0.987
ENSTSYG00000005291
M02528_2.00 		Tarsius syrichta
NNWDHDHWNN
NNWDHDHWNN		 PBM
Weirauch et al.(2014)
pTH9366 		0.672 0.947
lin54
M02526_2.00 		Danio rerio
NHTYRAAH
DTTYRADN		 PBM
Weirauch et al.(2014)
pTH8399 		0.672 0.920
SPU_025306
M02531_2.00 		Strongylocentrotus purpuratus
NNNNWYRAAH
DTTYRWNNNN		 PBM
Weirauch et al.(2014)
pTH9286 		0.672 0.880
NEMVEDRAFT_v1g111410
M01320_2.00 		Nematostella vectensis
NNNNYRWRN
NYWYRNNNN		 PBM
Lambert et al.(2019)
pTH9771 		0.672 0.840
XP_002124866.1
M01321_2.00 		Ciona intestinalis
NDTTYRAAN
NTTYRAAHN		 PBM
Lambert et al.(2019)
pTH9835 		0.672 0.827
BGIBMGA008956
M02524_2.00 		Bombyx mori
AATTTAAAW
WTTTAAATT		 PBM
Weirauch et al.(2014)
pTH9238 		0.672 0.813
GE12548
M02529_2.00 		Drosophila yakuba
DTTYAAAY
RTTTRAAH		 PBM
Weirauch et al.(2014)
pTH9262 		0.672 0.800
fgeneshCV_pg.C_scaffold_18000164
M02534_2.00 		Chlorella vulgaris
NNNNDYRAAH
DTTYRHNNNN		 PBM
Weirauch et al.(2014)
pTH9252 		0.672 0.680
AT5G25790
M01319_2.00 		Arabidopsis thaliana
NHYRAAHN
NDTTYRDN		 PBM
Lambert et al.(2019)
pTH11533 		0.672 0.667
AT2G20110
M02520_2.00 		Arabidopsis thaliana
DTTTAAAH
DTTTAAAH		 PBM
Weirauch et al.(2014)
pTH7914 		0.672 0.653
TCX5
M02523_2.00 		Arabidopsis thaliana
NRTTCAAAYN
NRTTTGAAYN		 PBM
Weirauch et al.(2014)
pTH8164 		0.672 0.653
AT2G20110
M07295_2.00 		Arabidopsis thaliana
WWHWAADATTYAAAW
WTTTRAATHTTWDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_col_a 		0.672 0.653
AT2G20110
M07296_2.00 		Arabidopsis thaliana
WWHNAAATTYAAAHN
NDTTTRAATTTNDWW		 Dap-seq
OMalley et al.(2016)
AT2G20110_colamp_a 		0.672 0.653
fgenesh1_pg.C_Chr_09.0001000301
M02533_2.00 		Ostreococcus tauri
NNNNNRHNN
NNDYNNNNN		 PBM
Weirauch et al.(2014)
pTH9457 		0.672 0.600
TCX3
M01087_2.00 		Arabidopsis thaliana
NNDTTYAAAH
DTTTRAAHNN		 PBM
Sullivan et al.(2014)
pTH7218 		0.672 0.587
TCX3
M02522_2.00 		Arabidopsis thaliana
WTTYAAAH
DTTTRAAW		 PBM
Weirauch et al.(2014)
pTH7421 		0.672 0.587
TCX3
M07297_2.00 		Arabidopsis thaliana
DWTTYRAAWTTBAAW
WTTVAAATTYRAAWH		 Dap-seq
OMalley et al.(2016)
SOL1_colamp_a 		0.672 0.587
TCX3
M07298_2.00 		Arabidopsis thaliana
WTWWAAAATTYAAAW
WTTTRAATTTTWWAW		 Dap-seq
OMalley et al.(2016)
SOL1_col 		0.672 0.587
TCX2
M07300_2.00 		Arabidopsis thaliana
WWTYVAAATTYRAAW
WTTYRAATTTBRAWW		 Dap-seq
OMalley et al.(2016)
TCX2_col_a 		0.672 0.573
TCX2
M07301_2.00 		Arabidopsis thaliana
TTYVAAATTYRAAW
WTTYRAATTTBRAA		 Dap-seq
OMalley et al.(2016)
TCX2_colamp_a 		0.672 0.573
TCX4
M02521_2.00 		Arabidopsis thaliana
DWTTYRAAWH
DWTTYRAAWH		 PBM
Weirauch et al.(2014)
pTH7573 		0.672 0.560
BRADI1G55710
M02525_2.00 		Brachypodium distachyon
NVTBYRVABN
NVTBYRVABN		 PBM
Weirauch et al.(2014)
pTH9241 		0.672 0.560
PK22848.1
M02532_2.00 		Cannabis sativa
NNNYNAAATTTNN
NNAAATTTNRNNN		 PBM
Weirauch et al.(2014)
pTH9724 		0.672 0.560
GSPATT00010696001
M02530_2.00 		Paramecium tetraurelia
NNBRAAHN
NDTTYVNN		 PBM
Weirauch et al.(2014)
pTH8720 		0.672 0.547
gw1.20.00.89.1
M02535_2.00 		Ostreococcus tauri
WNYWBVWRNW
WNYWBVWRNW		 PBM
Weirauch et al.(2014)
pTH9647 		0.672 0.547
TSO1
M07299_2.00 		Arabidopsis thaliana
WWWTWDAAATTYAAA
TTTRAATTTHWAWWW		 Dap-seq
OMalley et al.(2016)
TSO1_col_a 		0.672 0.547
PK27683.1
M01322_2.00 		Cannabis sativa
NDTTYAAAH
DTTTRAAHN		 PBM
Lambert et al.(2019)
pTH11347 		0.672 0.533
For this family, TFs with SR scores > 0.660 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSMMUP00000011159 TCR/CxC 520 556
ENSMMUP00000011159 TCR/CxC 594 631
ENSMMUP00000035265 TCR/CxC 433 469
ENSMMUP00000035265 TCR/CxC 507 544

Links

Other TCR/CxC family TFs
Other Macaca mulatta TFs

1214 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00002p00264660 Amborella trichopoda AMTR_s00002p00264660 I
AMTR_s00040p00180260 Amborella trichopoda AMTR_s00040p00180260 I
Aquca_017_00628 Aquilegia coerulea Aquca_017_00628 I
Aquca_027_00311 Aquilegia coerulea Aquca_027_00311 I
Aquca_036_00073 Aquilegia coerulea Aquca_036_00073 I
ERF3 Arabidopsis lyrata fgenesh2_kg.1__4150__AT1G50640.1 I
fgenesh2_kg.3__2537__AT3G23220.1 Arabidopsis lyrata fgenesh2_kg.3__2537__AT3G23220.1 I
ATERF13 Arabidopsis lyrata scaffold_403422.1 I
ERF3 Arabidopsis thaliana AT1G50640 D
ERF13 Arabidopsis thaliana AT2G44840 D
ERF7 Arabidopsis thaliana AT3G20310 D
Bostr.26675s0113 Boechera stricta Bostr.26675s0113 I
BRADI2G21067 Brachypodium distachyon BRADI2G21067 I
BRADI3G06562 Brachypodium distachyon BRADI3G06562 I
Bo3g074840 Brassica oleracea Bo3g074840 I
Bo4g024140 Brassica oleracea Bo4g024140 I
Bo4g195220 Brassica oleracea Bo4g195220 I
Bo6g022410 Brassica oleracea Bo6g022410 I
Bo7g040810 Brassica oleracea Bo7g040810 I
Bra001784 Brassica rapa Bra001784 I
Bra004873 Brassica rapa Bra004873 I
Bra014925 Brassica rapa Bra014925 I
Bra018864 Brassica rapa Bra018864 I
Bra037630 Brassica rapa Bra037630 I
PK02998.1 Cannabis sativa PK02998.1 I
PK17878.1 Cannabis sativa PK17878.1 D
PK23186.1 Cannabis sativa PK23186.1 I
PK25211.1 Cannabis sativa PK25211.1 I
Cagra.0239s0035 Capsella grandiflora Cagra.0239s0035 I
Cagra.0952s0001 Capsella grandiflora Cagra.0952s0001 I
Carubv10010284m.g Capsella rubella Carubv10010284m.g I
Carubv10023967m.g Capsella rubella Carubv10023967m.g I
evm.TU.supercontig_12.251 Carica papaya evm.TU.supercontig_12.251 I
evm.TU.supercontig_132.31 Carica papaya evm.TU.supercontig_132.31 I
evm.TU.supercontig_27.18 Carica papaya evm.TU.supercontig_27.18 I
evm.TU.supercontig_44.73 Carica papaya evm.TU.supercontig_44.73 I
Ca_00326 Cicer arietinum Ca_00326 I
Ca_12205 Cicer arietinum Ca_12205 I
Ca_17824 Cicer arietinum Ca_17824 I
Cla003319 Citrullus lanatus Cla003319 I
Cla005423 Citrullus lanatus Cla005423 I
Cla013723 Citrullus lanatus Cla013723 I
Cla020002 Citrullus lanatus Cla020002 I
Ciclev10009361m.g Citrus clementina Ciclev10009361m.g I
Ciclev10016668m.g Citrus clementina Ciclev10016668m.g I
Ciclev10016982m.g Citrus clementina Ciclev10016982m.g I
orange1.1g027990m.g Citrus sinensis orange1.1g027990m.g I
orange1.1g030994m.g Citrus sinensis orange1.1g030994m.g I
orange1.1g044584m.g Citrus sinensis orange1.1g044584m.g I
orange1.1g045783m.g Citrus sinensis orange1.1g045783m.g I
Cucsa.042770 Cucumis sativus Cucsa.042770 I
Cucsa.126860 Cucumis sativus Cucsa.126860 I
Cucsa.129330 Cucumis sativus Cucsa.129330 I
Cucsa.139820 Cucumis sativus Cucsa.139820 I
Cucsa.190200 Cucumis sativus Cucsa.190200 I
Cucsa.255330 Cucumis sativus Cucsa.255330 I
Eucgr.A01091 Eucalyptus grandis Eucgr.A01091 I
Eucgr.G00002 Eucalyptus grandis Eucgr.G00002 I
Eucgr.G00397 Eucalyptus grandis Eucgr.G00397 I
Thhalv10001758m.g Eutrema salsugineum Thhalv10001758m.g I
Thhalv10011689m.g Eutrema salsugineum Thhalv10011689m.g I
Thhalv10021393m.g Eutrema salsugineum Thhalv10021393m.g I
Thhalv10022108m.g Eutrema salsugineum Thhalv10022108m.g I
Thhalv10022200m.g Eutrema salsugineum Thhalv10022200m.g I
gene01152-v1.0-hybrid Fragaria vesca gene01152-v1.0-hybrid I
gene03450-v1.0-hybrid Fragaria vesca gene03450-v1.0-hybrid I
gene04913-v1.0-hybrid Fragaria vesca gene04913-v1.0-hybrid I
gene04917-v1.0-hybrid Fragaria vesca gene04917-v1.0-hybrid I
gene21403-v1.0-hybrid Fragaria vesca gene21403-v1.0-hybrid I
gene29735-v1.0-hybrid Fragaria vesca gene29735-v1.0-hybrid I
GLYMA02G43500 Glycine max GLYMA02G43500 I
GLYMA02G46340 Glycine max GLYMA02G46340 I
GLYMA03G31640 Glycine max GLYMA03G31640 I
GLYMA06G44430 Glycine max GLYMA06G44430 I
GLYMA10G23460 Glycine max GLYMA10G23460 I
GLYMA12G13315 Glycine max GLYMA12G13315 I
GLYMA13G31010 Glycine max GLYMA13G31010 I
GLYMA14G02360 Glycine max GLYMA14G02360 I
GLYMA14G05470 Glycine max GLYMA14G05470 I
GLYMA15G08360 Glycine max GLYMA15G08360 I
GLYMA20G16920 Glycine max GLYMA20G16920 I
Gorai.001G252400 Gossypium raimondii Gorai.001G252400 I
Gorai.002G092900 Gossypium raimondii Gorai.002G092900 I
Gorai.004G032500 Gossypium raimondii Gorai.004G032500 I
Gorai.007G312200 Gossypium raimondii Gorai.007G312200 I
Gorai.009G443400 Gossypium raimondii Gorai.009G443400 I
Gorai.011G029700 Gossypium raimondii Gorai.011G029700 I
Gorai.013G169500 Gossypium raimondii Gorai.013G169500 I
MLOC_10878 Hordeum vulgare MLOC_10878 I
LPERR02G05920 Leersia perrieri LPERR02G05920 I
LPERR05G17470 Leersia perrieri LPERR05G17470 I
Lus10016212.g Linum usitatissimum Lus10016212.g I
Lus10029987.g Linum usitatissimum Lus10029987.g I
Lus10031526.g Linum usitatissimum Lus10031526.g I
Lus10035329.g Linum usitatissimum Lus10035329.g I
Lus10043182.g Linum usitatissimum Lus10043182.g I
chr1.CM0375.170.nd Lotus japonicus chr1.CM0375.170.nd I
chr2.LjT24P12.30.nd Lotus japonicus chr2.LjT24P12.30.nd I
chr3.CM0080.270.nc Lotus japonicus chr3.CM0080.270.nc I
chr6.CM0114.130.nc Lotus japonicus chr6.CM0114.130.nc I
MDP0000236605 Malus domestica MDP0000236605 I
MDP0000243113 Malus domestica MDP0000243113 I
MDP0000310904 Malus domestica MDP0000310904 I
MDP0000457509 Malus domestica MDP0000457509 I
MDP0000542633 Malus domestica MDP0000542633 I
MDP0000629527 Malus domestica MDP0000629527 I
MDP0000744693 Malus domestica MDP0000744693 I
MDP0000839828 Malus domestica MDP0000839828 I
cassava19883.m1 Manihot esculenta cassava19883.m1 I
cassava34729.m1 Manihot esculenta cassava34729.m1 I
cassava42971.valid.m1 Manihot esculenta cassava42971.valid.m1 I
cassava43266.valid.m1 Manihot esculenta cassava43266.valid.m1 I
cassava4486.m1 Manihot esculenta cassava4486.m1 I
cassava6588.valid.m1 Manihot esculenta cassava6588.valid.m1 I
MTR_2g014300 Medicago truncatula MTR_2g014300 I
MTR_5g085070 Medicago truncatula MTR_5g085070 I
MTR_5g085100 Medicago truncatula MTR_5g085100 I
MTR_8g006815 Medicago truncatula MTR_8g006815 I
mgf007166m Mimulus guttatus mgf007166m I
mgf016282m Mimulus guttatus mgf016282m I
mgf023367m Mimulus guttatus mgf023367m I
GSMUA_Achr3G13010_001 Musa acuminata GSMUA_Achr3G13010_001 I
GSMUA_Achr3G29290_001 Musa acuminata GSMUA_Achr3G29290_001 I
GSMUA_Achr4G04060_001 Musa acuminata GSMUA_Achr4G04060_001 I
GSMUA_Achr4G06170_001 Musa acuminata GSMUA_Achr4G06170_001 I
GSMUA_Achr4G06660_001 Musa acuminata GSMUA_Achr4G06660_001 I
GSMUA_Achr4G11430_001 Musa acuminata GSMUA_Achr4G11430_001 I
GSMUA_Achr5G09940_001 Musa acuminata GSMUA_Achr5G09940_001 I
GSMUA_Achr6G00240_001 Musa acuminata GSMUA_Achr6G00240_001 I
GSMUA_Achr6G01440_001 Musa acuminata GSMUA_Achr6G01440_001 I
GSMUA_AchrUn_randomG06910_001 Musa acuminata GSMUA_AchrUn_randomG06910_001 I
ORGLA02G0063000 Oryza glaberrima ORGLA02G0063000 I
ORGLA05G0187500 Oryza glaberrima ORGLA05G0187500 I
ORGLA08G0225800 Oryza glaberrima ORGLA08G0225800 I
OGLUM02G06860 Oryza glumaepatula OGLUM02G06860 I
OGLUM05G22780 Oryza glumaepatula OGLUM05G22780 I
BGIOSGA017797 Oryza indica BGIOSGA017797 I
BGIOSGA029071 Oryza indica BGIOSGA029071 I
OMERI02G07840 Oryza meridionalis OMERI02G07840 I
OMERI05G19480 Oryza meridionalis OMERI05G19480 I
OMERI08G16840 Oryza meridionalis OMERI08G16840 I
ONIVA05G22260 Oryza nivara ONIVA05G22260 I
OPUNC02G05940 Oryza punctata OPUNC02G05940 I
OPUNC02G31100 Oryza punctata OPUNC02G31100 I
OPUNC05G19220 Oryza punctata OPUNC05G19220 I
ORUFI02G06880 Oryza rufipogon ORUFI02G06880 I
ORUFI05G22840 Oryza rufipogon ORUFI05G22840 I
OS05G0497200 Oryza sativa OS05G0497200 D
Pavir.Aa03102 Panicum virgatum Pavir.Aa03102 I
Pavir.Ab00660 Panicum virgatum Pavir.Ab00660 I
Pavir.Da00220 Panicum virgatum Pavir.Da00220 I
Pavir.Eb03165 Panicum virgatum Pavir.Eb03165 I
e_gw1.124.59.1 Physcomitrella patens e_gw1.124.59.1 I
e_gw1.487.2.1 Physcomitrella patens e_gw1.487.2.1 I
estExt_gwp_gw1.C_1270048 Physcomitrella patens estExt_gwp_gw1.C_1270048 I
gw1.90.191.1 Physcomitrella patens gw1.90.191.1 I
POPTR_0001s36610 Populus trichocarpa POPTR_0001s36610 I
POPTR_0002s04430 Populus trichocarpa POPTR_0002s04430 I
POPTR_0004s04700 Populus trichocarpa POPTR_0004s04700 I
POPTR_0005s24110 Populus trichocarpa POPTR_0005s24110 I
POPTR_0011s05570 Populus trichocarpa POPTR_0011s05570 I
POPTR_0014s04640 Populus trichocarpa POPTR_0014s04640 I
Pm010083 Prunus mume Pm010083 I
Pm011907 Prunus mume Pm011907 I
Pm014953 Prunus mume Pm014953 I
Pm017696 Prunus mume Pm017696 I
Pm020210 Prunus mume Pm020210 I
PRUPE_ppa010804mg Prunus persica PRUPE_ppa010804mg I
PRUPE_ppa010893mg Prunus persica PRUPE_ppa010893mg I
PRUPE_ppa012385mg Prunus persica PRUPE_ppa012385mg I
PRUPE_ppa016903mg Prunus persica PRUPE_ppa016903mg I
PRUPE_ppa022435mg Prunus persica PRUPE_ppa022435mg I
PRUPE_ppb014367mg Prunus persica PRUPE_ppb014367mg I
29640.m000403 Ricinus communis 29640.m000403 I
30174.m008755 Ricinus communis 30174.m008755 I
30174.m008756 Ricinus communis 30174.m008756 I
30174.m008759 Ricinus communis 30174.m008759 I
30190.m011323 Ricinus communis 30190.m011323 I
SapurV1A.0007s0970 Salix purpurea SapurV1A.0007s0970 I
SapurV1A.0012s0570 Salix purpurea SapurV1A.0012s0570 I
SapurV1A.0032s0450 Salix purpurea SapurV1A.0032s0450 I
SapurV1A.0124s0170 Salix purpurea SapurV1A.0124s0170 I
SapurV1A.0126s0320 Salix purpurea SapurV1A.0126s0320 I
SapurV1A.0126s0330 Salix purpurea SapurV1A.0126s0330 I
SELMODRAFT_129122 Selaginella moellendorffii SELMODRAFT_129122 I
SELMODRAFT_17648 Selaginella moellendorffii SELMODRAFT_17648 I
SELMODRAFT_430375 Selaginella moellendorffii SELMODRAFT_430375 I
SELMODRAFT_443461 Selaginella moellendorffii SELMODRAFT_443461 I
SELMODRAFT_49950 Selaginella moellendorffii SELMODRAFT_49950 I
SELMODRAFT_72880 Selaginella moellendorffii SELMODRAFT_72880 I
SELMODRAFT_73142 Selaginella moellendorffii SELMODRAFT_73142 I
SELMODRAFT_73144 Selaginella moellendorffii SELMODRAFT_73144 I
Solyc02g077840.1 Solanum lycopersicum Solyc02g077840.1 I
Solyc07g049490.1 Solanum lycopersicum Solyc07g049490.1 I
Solyc07g064890.1 Solanum lycopersicum Solyc07g064890.1 I
Solyc10g006130.1 Solanum lycopersicum Solyc10g006130.1 I
PGSC0003DMG400000681 Solanum tuberosum PGSC0003DMG400000681 I
PGSC0003DMG400014417 Solanum tuberosum PGSC0003DMG400014417 I
PGSC0003DMG400022305 Solanum tuberosum PGSC0003DMG400022305 I
PGSC0003DMG400029713 Solanum tuberosum PGSC0003DMG400029713 I
Sb03g037085 Sorghum bicolor Sb03g037085 I
Sb04g006080 Sorghum bicolor Sb04g006080 I
Sb07g025843 Sorghum bicolor Sb07g025843 I
Sb08g004260 Sorghum bicolor Sb08g004260 I
TCM_005706 Theobroma cacao TCM_005706 I
TCM_005707 Theobroma cacao TCM_005707 I
TCM_029823 Theobroma cacao TCM_029823 I
TCM_030804 Theobroma cacao TCM_030804 I
Traes_5BL_FBC7AF288 Triticum aestivum Traes_5BL_FBC7AF288 I
VIT_07s0141g00690 Vitis vinifera VIT_07s0141g00690 I
ERF12 Vitis vinifera VIT_10s0003g00130 I
VIT_12s0059g01460 Vitis vinifera VIT_12s0059g01460 I
VIT_14s0081g00520 Vitis vinifera VIT_14s0081g00520 I
VIT_19s0090g01080 Vitis vinifera VIT_19s0090g01080 I
GRMZM2G020016 Zea mays GRMZM2G020016 I
GRMZM2G079653 Zea mays GRMZM2G079653 I
GRMZM2G103085 Zea mays GRMZM2G103085 I
GRMZM2G146028 Zea mays GRMZM2G146028 I