Ciclev10012160m.g (Citrus clementina)
WRC

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF08879 (WRC) IPR014977 Ciclev10012160m.g T351583_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AT2G42040
M01088_2.00 		Arabidopsis thaliana
NBTRCACYNN
NNRGTGYAVN		 PBM
Sullivan et al.(2014)
pTH7503 		0.884 0.884
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ciclev10012160m WRC 200 242

Links

Other WRC family TFs
Other Citrus clementina TFs

90 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_01928 Aegilops tauschii F775_01928 I 0.833
AMTR_s00024p00159910 Amborella trichopoda AMTR_s00024p00159910 I 0.721
Aquca_014_00855 Aquilegia coerulea Aquca_014_00855 I 0.814
fgenesh2_kg.4__2350__AT2G42040.1 Arabidopsis lyrata fgenesh2_kg.4__2350__AT2G42040.1 I 0.884
AT2G42040 Arabidopsis thaliana AT2G42040 D 0.884
Bostr.25993s0574 Boechera stricta Bostr.25993s0574 I 0.860
BRADI1G46270 Brachypodium distachyon BRADI1G46270 I 0.791
Bo4g191280 Brassica oleracea Bo4g191280 I 0.814
Bo3g035920 Brassica oleracea Bo3g035920 I 0.860
Bo4g014690 Brassica oleracea Bo4g014690 I 0.837
Bra000251 Brassica rapa Bra000251 I 0.860
Bra004667 Brassica rapa Bra004667 I 0.814
Bra016897 Brassica rapa Bra016897 I 0.837
PK26699.1 Cannabis sativa PK26699.1 I 0.953
Cagra.13389s0020 Capsella grandiflora Cagra.13389s0020 I 0.860
Carubv10023878m.g Capsella rubella Carubv10023878m.g I 0.860
evm.TU.supercontig_85.54 Carica papaya evm.TU.supercontig_85.54 I 0.977
Ca_07320 Cicer arietinum Ca_07320 I 0.977
orange1.1g019760m.g Citrus sinensis orange1.1g019760m.g I 1.000
Cucsa.242590 Cucumis sativus Cucsa.242590 I 0.977
Eucgr.A02456 Eucalyptus grandis Eucgr.A02456 I 0.977
Thhalv10017052m.g Eutrema salsugineum Thhalv10017052m.g I 0.884
gene00456-v1.0-hybrid Fragaria vesca gene00456-v1.0-hybrid I 0.977
GLYMA02G28962 Glycine max GLYMA02G28962 I 0.953
GLYMA03G30170 Glycine max GLYMA03G30170 I 0.977
GLYMA09G16841 Glycine max GLYMA09G16841 I 0.977
GLYMA19G33070 Glycine max GLYMA19G33070 I 0.977
Gorai.002G156300 Gossypium raimondii Gorai.002G156300 I 0.953
Gorai.012G100300 Gossypium raimondii Gorai.012G100300 I 0.977
MLOC_17575 Hordeum vulgare MLOC_17575 I 0.791
LPERR02G28190 Leersia perrieri LPERR02G28190 I 0.814
LPERR06G06210 Leersia perrieri LPERR06G06210 I 0.767
LjT35F01.80.nd Lotus japonicus LjT35F01.80.nd I 0.953
MDP0000121493 Malus domestica MDP0000121493 I 0.977
MDP0000154434 Malus domestica MDP0000154434 I 1.000
cassava36464.valid.m1 Manihot esculenta cassava36464.valid.m1 I 0.977
cassava31648.valid.m1 Manihot esculenta cassava31648.valid.m1 I 0.977
cassava36463.valid.m1 Manihot esculenta cassava36463.valid.m1 I 0.977
MTR_1g054175 Medicago truncatula MTR_1g054175 I 0.977
MTR_7g093350 Medicago truncatula MTR_7g093350 I 0.977
MTR_7g093360 Medicago truncatula MTR_7g093360 I 0.977
mgf007626m Mimulus guttatus mgf007626m I 0.791
GSMUA_Achr3G07730_001 Musa acuminata GSMUA_Achr3G07730_001 I 0.953
GSMUA_Achr3G20210_001 Musa acuminata GSMUA_Achr3G20210_001 I 0.930
GSMUA_Achr10G29530_001 Musa acuminata GSMUA_Achr10G29530_001 I 0.977
GSMUA_Achr7G18600_001 Musa acuminata GSMUA_Achr7G18600_001 I 0.977
GSMUA_Achr9G15730_001 Musa acuminata GSMUA_Achr9G15730_001 I 0.977
OBART06G06800 Oryza barthii OBART06G06800 I 0.814
OB06G16230 Oryza brachyantha OB06G16230 I 0.791
ORGLA02G0296600 Oryza glaberrima ORGLA02G0296600 I 0.814
ORGLA06G0063300 Oryza glaberrima ORGLA06G0063300 I 0.810
OGLUM02G35430 Oryza glumaepatula OGLUM02G35430 I 0.814
OGLUM06G07170 Oryza glumaepatula OGLUM06G07170 I 0.810
BGIOSGA022518 Oryza indica BGIOSGA022518 I 0.810
BGIOSGA005516 Oryza indica BGIOSGA005516 I 0.814
OMERI02G32570 Oryza meridionalis OMERI02G32570 I 0.814
OMERI06G07980 Oryza meridionalis OMERI06G07980 I 0.767
ONIVA02G36360 Oryza nivara ONIVA02G36360 I 0.814
ONIVA06G08110 Oryza nivara ONIVA06G08110 I 0.810
OPUNC02G31650 Oryza punctata OPUNC02G31650 I 0.814
OPUNC06G06450 Oryza punctata OPUNC06G06450 I 0.791
ORUFI06G07050 Oryza rufipogon ORUFI06G07050 I 0.810
ORUFI02G35820 Oryza rufipogon ORUFI02G35820 I 0.814
OS02G0773600 Oryza sativa OS02G0773600 I 0.814
OS06G0207600 Oryza sativa OS06G0207600 I 0.810
Pavir.J25248 Panicum virgatum Pavir.J25248 I 0.791
Pavir.J23833 Panicum virgatum Pavir.J23833 I 0.791
PDK_20s1436981g002 Phoenix dactylifera PDK_20s1436981g002 I 0.907
POPTR_0006s20770 Populus trichocarpa POPTR_0006s20770 I 0.977
POPTR_0006s20790 Populus trichocarpa POPTR_0006s20790 I 0.977
POPTR_0016s05850 Populus trichocarpa POPTR_0016s05850 I 0.977
POPTR_0016s05840 Populus trichocarpa POPTR_0016s05840 I 1.000
Pm025936 Prunus mume Pm025936 I 0.977
PRUPE_ppa016277mg Prunus persica PRUPE_ppa016277mg I 0.977
29613.m000377 Ricinus communis 29613.m000377 I 0.953
29613.m000379 Ricinus communis 29613.m000379 I 0.977
SapurV1A.0251s0220 Salix purpurea SapurV1A.0251s0220 I 0.930
SapurV1A.0251s0230 Salix purpurea SapurV1A.0251s0230 I 0.953
SapurV1A.0854s0090 Salix purpurea SapurV1A.0854s0090 I 1.000
SapurV1A.0854s0100 Salix purpurea SapurV1A.0854s0100 I 0.953
SapurV1A.3188s0010 Salix purpurea SapurV1A.3188s0010 I 0.930
Solyc10g080530.1 Solanum lycopersicum Solyc10g080530.1 I 0.930
PGSC0003DMG400023669 Solanum tuberosum PGSC0003DMG400023669 I 0.930
Sb10g006810 Sorghum bicolor Sb10g006810 I 0.791
TCM_024932 Theobroma cacao TCM_024932 I 0.977
VIT_08s0007g06640 Vitis vinifera VIT_08s0007g06640 I 0.977
VIT_08s0007g06690 Vitis vinifera VIT_08s0007g06690 I 0.884
GRMZM2G165991 Zea mays GRMZM2G165991 I 0.721
GRMZM2G134552 Zea mays GRMZM2G134552 N 0.721
GRMZM2G033915 Zea mays GRMZM2G033915 I 0.767