Solyc06g048870.1 (Solanum lycopersicum)
WRKY

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03106 (WRKY) IPR003657 Solyc06g048870.1 T354790_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
WRKY55
M07392_2.00 		Arabidopsis thaliana
HWAGTCAACGNH
DNCGTTGACTWD		 Dap-seq
OMalley et al.(2016)
WRKY55_col_a 		0.854 0.702
WRKY53
M01090_2.00 		Arabidopsis thaliana
RGTCAACNN
NNGTTGACY		 PBM
Sullivan et al.(2014)
pTH8245 		0.814 0.579
WRKY30
M02563_2.00 		Arabidopsis thaliana
RGTCAACNNN
NNNGTTGACY		 PBM
Weirauch et al.(2014)
pTH7611 		0.810 0.509
WRKY30
M07422_2.00 		Arabidopsis thaliana
DAAGTCAACGN
NCGTTGACTTH		 Dap-seq
OMalley et al.(2016)
WRKY30_col_a 		0.810 0.509
WRKY30
M07423_2.00 		Arabidopsis thaliana
NNAAGTCAACGNH
DNCGTTGACTTNN		 Dap-seq
OMalley et al.(2016)
WRKY30_colamp_a 		0.810 0.509
WRKY70
M07399_2.00 		Arabidopsis thaliana
HAAAGTCAACGNN
NNCGTTGACTTTD		 Dap-seq
OMalley et al.(2016)
WRKY70_col 		0.810 0.491
For this family, TFs with SR scores > 0.808 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc06g048870.1.1 WRKY 46 102

Links

Other WRKY family TFs
Other Solanum lycopersicum TFs

304 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00087p00039380 Amborella trichopoda AMTR_s00087p00039380 N
ATMYB16 Arabidopsis thaliana AT5G15310 I
Cagra.5789s0001 Capsella grandiflora Cagra.5789s0001 N
Cagra.0876s0043 Capsella grandiflora Cagra.0876s0043 N
Eucgr.B03766 Eucalyptus grandis Eucgr.B03766 N
Gorai.012G186500 Gossypium raimondii Gorai.012G186500 I
MLOC_71332 Hordeum vulgare MLOC_71332 N
MLOC_23224 Hordeum vulgare MLOC_23224 N
MLOC_52896 Hordeum vulgare MLOC_52896 I
LjSGA_057664.1 Lotus japonicus LjSGA_057664.1 N
LjSGA_014958.1 Lotus japonicus LjSGA_014958.1 N
chr1.CM0600.120.nd Lotus japonicus chr1.CM0600.120.nd N
MDP0000879675 Malus domestica MDP0000879675 N
MDP0000413041 Malus domestica MDP0000413041 N
cassava15703.m1 Manihot esculenta cassava15703.m1 N
mgf023771m Mimulus guttatus mgf023771m N
OB06G28240 Oryza brachyantha OB06G28240 N
OGLUM11G01380 Oryza glumaepatula OGLUM11G01380 N
OLONG_025203 Oryza longistaminata OLONG_025203 N
OPUNC01G25350 Oryza punctata OPUNC01G25350 N
Pavir.Eb00654 Panicum virgatum Pavir.Eb00654 I
Pavir.Db00878 Panicum virgatum Pavir.Db00878 N
Pavir.Eb03517 Panicum virgatum Pavir.Eb03517 I
PDK_20s1922781g001 Phoenix dactylifera PDK_20s1922781g001 N
POPTR_0017s10780 Populus trichocarpa POPTR_0017s10780 N
SapurV1A.0006s0790 Salix purpurea SapurV1A.0006s0790 I
SapurV1A.0021s0930 Salix purpurea SapurV1A.0021s0930 I
PGSC0003DMG401010883 Solanum tuberosum PGSC0003DMG401010883 N
PGSC0003DMG400014550 Solanum tuberosum PGSC0003DMG400014550 I
TCM_041010 Theobroma cacao TCM_041010 I
Traes_7DS_76515C538 Triticum aestivum Traes_7DS_76515C538 N
Traes_7AS_FD974A17F Triticum aestivum Traes_7AS_FD974A17F N
Traes_6AL_C0A2B4F041 Triticum aestivum Traes_6AL_C0A2B4F041 N
Traes_4AL_17C974117 Triticum aestivum Traes_4AL_17C974117 N
Traes_3DL_D9A29948B Triticum aestivum Traes_3DL_D9A29948B N
Traes_3AL_F09C7CA19 Triticum aestivum Traes_3AL_F09C7CA19 N