OBART05G12580 (Oryza barthii)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2) IPR001471 OBART05G12580 T003124_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Q84ND8_HORVU
M09719_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DRF11_01 		0.703 0.900
Q84JE9_HORVU
M09718_2.00 		Hordeum vulgare Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$DRF13_01 		0.703 0.900
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
OBART05G12580.1 AP2 132 183
OBART05G12580.2 AP2 87 138

Links

Other AP2 family TFs
Other Oryza barthii TFs

28 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ORGLA05G0107600 Oryza glaberrima ORGLA05G0107600 I 0.831
BGIOSGA018253 Oryza indica BGIOSGA018253 I 0.826
OGLUM05G13290 Oryza glumaepatula OGLUM05G13290 I 0.826
OLONG_017780 Oryza longistaminata OLONG_017780 I 0.826
OMERI05G11290 Oryza meridionalis OMERI05G11290 I 0.826
ONIVA05G13030 Oryza nivara ONIVA05G13030 I 0.826
OPUNC05G10700 Oryza punctata OPUNC05G10700 I 0.826
ORUFI05G13560 Oryza rufipogon ORUFI05G13560 I 0.816
LPERR05G09930 Leersia perrieri LPERR05G09930 I 0.770
OB05G20700 Oryza brachyantha OB05G20700 I 0.763
AMTR_s00023p00044590 Amborella trichopoda AMTR_s00023p00044590 I 0.731
BRADI2G29960 Brachypodium distachyon BRADI2G29960 I 0.719
GLYMA06G45680 Glycine max GLYMA06G45680 I 0.704
MLOC_77405 Hordeum vulgare MLOC_77405 I 0.703
Q84JE9_HORVU Hordeum vulgare Q84JE9_HORVU D 0.703
Q84ND8_HORVU Hordeum vulgare Q84ND8_HORVU D 0.703
F775_32062 Aegilops tauschii F775_32062 I 0.686
GLYMA12G32400 Glycine max GLYMA12G32400 I 0.686
GLYMA13G38030 Glycine max GLYMA13G38030 I 0.686
Traes_1AL_A9FB6BF52 Triticum aestivum Traes_1AL_A9FB6BF52 I 0.686
Traes_1BL_BDF0801D01 Triticum aestivum Traes_1BL_BDF0801D01 I 0.686
TRIUR3_17409 Triticum urartu TRIUR3_17409 I 0.686
SapurV1A.1286s0030 Salix purpurea SapurV1A.1286s0030 I 0.685
SapurV1A.2268s0010 Salix purpurea SapurV1A.2268s0010 I 0.685
Bo9g177130 Brassica oleracea Bo9g177130 I 0.684
GLYMA12G11150 Glycine max GLYMA12G11150 I 0.683
Thhalv10016913m.g Eutrema salsugineum Thhalv10016913m.g I 0.682