chr2.CM0903.260.nd (Lotus japonicus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 chr2.CM0903.260.nd T010172_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.691 0.792
ERF118
M01047_2.00 		Arabidopsis thaliana
NCGCCGYNN
NNRCGGCGN		 PBM
Sullivan et al.(2014)
pTH7330 		0.687 0.667
ERF118
M06591_2.00 		Arabidopsis thaliana
YHDYCKCCGCCGYHD
HDRCGGCGGMGRHDR		 Dap-seq
OMalley et al.(2016)
CRF10_col100_a 		0.687 0.667
ERF118
M06592_2.00 		Arabidopsis thaliana
NGDATCHNDGATTCNNH
DNNGAATCHNDGATHCN		 Dap-seq
OMalley et al.(2016)
CRF10_colamp_a 		0.687 0.667
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr2.CM0903.260.nd AP2 105 155

Links

Other AP2 family TFs
Other Lotus japonicus TFs

21 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ca_05485 Cicer arietinum Ca_05485 I 0.770
GLYMA01G20383 Glycine max GLYMA01G20383 I 0.763
GLYMA08G30716 Glycine max GLYMA08G30716 I 0.763
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.744
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.744
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.744
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.743
Cla008128 Citrullus lanatus Cla008128 I 0.728
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.728
PGSC0003DMG400015880 Solanum tuberosum PGSC0003DMG400015880 I 0.719
Solyc04g007180.1 Solanum lycopersicum Solyc04g007180.1 I 0.719
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.708
MTR_8g023700 Medicago truncatula MTR_8g023700 N 0.708
MDP0000166779 Malus domestica MDP0000166779 N 0.700
PK24580.1 Cannabis sativa PK24580.1 D 0.691
Cucsa.121430 Cucumis sativus Cucsa.121430 N 0.690
gene25185-v1.0-hybrid Fragaria vesca gene25185-v1.0-hybrid I 0.690
ERF118 Arabidopsis thaliana AT1G68550 D 0.687
MDP0000119956 Malus domestica MDP0000119956 I 0.687
MDP0000743350 Malus domestica MDP0000743350 I 0.687
Eucgr.G02326 Eucalyptus grandis Eucgr.G02326 I 0.681