Solyc12g006340.1 (Solanum lycopersicum)
B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02362 (B3) IPR003340 Solyc12g006340.1 T021437_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF8
M01697_2.00 		Arabidopsis thaliana
NHTGTCGGN
NCCGACADN		 PBM
Weirauch et al.(2014)
pTH8661 		0.768 0.768
ARF5
M06701_2.00 		Arabidopsis thaliana
WYTTGTCGGN
NCCGACAARW		 Dap-seq
OMalley et al.(2016)
MP_col 		0.768 0.768
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Solyc12g006340.1.1 B3 128 189

Links

Other B3 family TFs
Other Solanum lycopersicum TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Solyc12g006350.1 Solanum lycopersicum Solyc12g006350.1 I 0.946
Bo6g099440 Brassica oleracea Bo6g099440 I 0.875
Bra004125 Brassica rapa Bra004125 I 0.875
GLYMA02G45100 Glycine max GLYMA02G45100 I 0.875
GLYMA14G03650 Glycine max GLYMA14G03650 I 0.875
PRUPE_ppa001069mg Prunus persica PRUPE_ppa001069mg I 0.875
Pm014818 Prunus mume Pm014818 I 0.875
Eucgr.A02065 Eucalyptus grandis Eucgr.A02065 I 0.875
evm.TU.supercontig_17.53 Carica papaya evm.TU.supercontig_17.53 I 0.875
gene22728-v1.0-hybrid Fragaria vesca gene22728-v1.0-hybrid I 0.875
MDP0000153538 Malus domestica MDP0000153538 I 0.875
MDP0000319957 Malus domestica MDP0000319957 I 0.875
ARF6 Arabidopsis thaliana AT1G30330 I 0.857
Bo5g062810 Brassica oleracea Bo5g062810 I 0.857
ARF6 Arabidopsis lyrata fgenesh2_kg.1__3210__AT1G30330.2 I 0.857
GRMZM2G073750 Zea mays GRMZM2G073750 I 0.857
GSMUA_Achr6G19850_001 Musa acuminata GSMUA_Achr6G19850_001 I 0.857
Bostr.15697s0332 Boechera stricta Bostr.15697s0332 I 0.857
Cagra.1508s0171 Capsella grandiflora Cagra.1508s0171 I 0.857
Carubv10008239m.g Capsella rubella Carubv10008239m.g I 0.857
Ciclev10014200m.g Citrus clementina Ciclev10014200m.g I 0.857
orange1.1g002390m.g Citrus sinensis orange1.1g002390m.g I 0.857
Thhalv10006747m.g Eutrema salsugineum Thhalv10006747m.g I 0.857
GSMUA_Achr11G25770_001 Musa acuminata GSMUA_Achr11G25770_001 I 0.839
Solyc02g037530.2 Solanum lycopersicum Solyc02g037530.2 I 0.839
mgf007038m Mimulus guttatus mgf007038m I 0.839
ARF6 Oryza indica BGIOSGA007604 I 0.821
LPERR02G04280 Leersia perrieri LPERR02G04280 I 0.821
OBART02G04960 Oryza barthii OBART02G04960 I 0.821
OGLUM02G04770 Oryza glumaepatula OGLUM02G04770 I 0.821
OLONG_020465 Oryza longistaminata OLONG_020465 I 0.821
OMERI02G05780 Oryza meridionalis OMERI02G05780 I 0.821
ONIVA02G05150 Oryza nivara ONIVA02G05150 I 0.821
OPUNC02G04120 Oryza punctata OPUNC02G04120 I 0.821
ORGLA02G0045800 Oryza glaberrima ORGLA02G0045800 I 0.821
ORUFI02G05060 Oryza rufipogon ORUFI02G05060 I 0.821
ARF6 Oryza sativa OS02G0164900 I 0.821
Sb10g027220 Sorghum bicolor Sb10g027220 I 0.821
Cucsa.117420 Cucumis sativus Cucsa.117420 I 0.808
LjSGA_022975.2 Lotus japonicus LjSGA_022975.2 I 0.808
AMTR_s00092p00072950 Amborella trichopoda AMTR_s00092p00072950 I 0.804
GSMUA_Achr1G08230_001 Musa acuminata GSMUA_Achr1G08230_001 I 0.804
GSMUA_Achr5G00590_001 Musa acuminata GSMUA_Achr5G00590_001 I 0.804
MLOC_58330 Hordeum vulgare MLOC_58330 I 0.804
POPTR_0011s09450 Populus trichocarpa POPTR_0011s09450 I 0.804
PRUPE_ppa001179mg Prunus persica PRUPE_ppa001179mg I 0.804
TCM_001906 Theobroma cacao TCM_001906 I 0.804
TCM_029410 Theobroma cacao TCM_029410 I 0.804
Traes_7BL_66296695F Triticum aestivum Traes_7BL_66296695F I 0.804
Traes_7DL_C89614A4D Triticum aestivum Traes_7DL_C89614A4D I 0.804
ARF6 Vitis vinifera VIT_10s0003g04100 I 0.804
Cla009963 Citrullus lanatus Cla009963 I 0.804
Pm010467 Prunus mume Pm010467 I 0.804
29599.m000177 Ricinus communis 29599.m000177 I 0.804
cassava2408.valid.m1 Manihot esculenta cassava2408.valid.m1 I 0.804
cassava29103.valid.m1 Manihot esculenta cassava29103.valid.m1 I 0.804
cassava29104.valid.m1 Manihot esculenta cassava29104.valid.m1 I 0.804
cassava32201.m1 Manihot esculenta cassava32201.m1 I 0.804
Cucsa.047990 Cucumis sativus Cucsa.047990 I 0.804
Aquca_022_00246 Aquilegia coerulea Aquca_022_00246 I 0.804
gene30394-v1.0-hybrid Fragaria vesca gene30394-v1.0-hybrid I 0.804
Gorai.009G152700 Gossypium raimondii Gorai.009G152700 I 0.804
MDP0000232417 Malus domestica MDP0000232417 I 0.804
MDP0000268306 Malus domestica MDP0000268306 I 0.804
SapurV1A.0030s0180 Salix purpurea SapurV1A.0030s0180 I 0.804
SapurV1A.0355s0030 Salix purpurea SapurV1A.0355s0030 I 0.804
PK26077.1 Cannabis sativa PK26077.1 I 0.804
ORUFI06G26570 Oryza rufipogon ORUFI06G26570 I 0.800
SapurV1A.4298s0010 Salix purpurea SapurV1A.4298s0010 I 0.800
GRMZM2G081158 Zea mays GRMZM2G081158 I 0.786
MTR_5g076270 Medicago truncatula MTR_5g076270 I 0.786
OB05G33320 Oryza brachyantha OB05G33320 I 0.786
OB12G25550 Oryza brachyantha OB12G25550 I 0.786
PGSC0003DMG401018664 Solanum tuberosum PGSC0003DMG401018664 I 0.786
POPTR_0017s01870 Populus trichocarpa POPTR_0017s01870 I 0.786
Sb08g021460 Sorghum bicolor Sb08g021460 I 0.786
Si016562m.g Setaria italica Si016562m.g I 0.786
TCM_017488 Theobroma cacao TCM_017488 I 0.786
VIT_00s1203g00010 Vitis vinifera VIT_00s1203g00010 I 0.786
VIT_03s0167g00010 Vitis vinifera VIT_03s0167g00010 I 0.786
Ca_15694 Cicer arietinum Ca_15694 I 0.786
Cla019844 Citrullus lanatus Cla019844 I 0.786
29769.m000463 Ricinus communis 29769.m000463 I 0.786
cassava30265.valid.m1 Manihot esculenta cassava30265.valid.m1 I 0.786
cassava30266.valid.m1 Manihot esculenta cassava30266.valid.m1 I 0.786
cassava35541.valid.m1 Manihot esculenta cassava35541.valid.m1 I 0.786
Cucsa.152170 Cucumis sativus Cucsa.152170 I 0.786
Cucsa.173470 Cucumis sativus Cucsa.173470 I 0.786
mgf005961m Mimulus guttatus mgf005961m I 0.786
Aquca_002_01425 Aquilegia coerulea Aquca_002_01425 I 0.786
Gorai.008G054600 Gossypium raimondii Gorai.008G054600 I 0.786
Lus10007386.g Linum usitatissimum Lus10007386.g I 0.786
Lus10010969.g Linum usitatissimum Lus10010969.g I 0.786
Lus10017640.g Linum usitatissimum Lus10017640.g I 0.786
Lus10031354.g Linum usitatissimum Lus10031354.g I 0.786
Lus10033597.g Linum usitatissimum Lus10033597.g I 0.786
SapurV1A.0147s0210 Salix purpurea SapurV1A.0147s0210 I 0.786
SapurV1A.0289s0180 Salix purpurea SapurV1A.0289s0180 I 0.786
ARF5 Arabidopsis thaliana AT1G19850 D 0.768
ARF8 Arabidopsis thaliana AT5G37020 D 0.768
BRADI4G01730 Brachypodium distachyon BRADI4G01730 I 0.768
ARF8 Arabidopsis lyrata fgenesh2_kg.7__3131__AT5G37020.1 I 0.768
GRMZM2G702026 Zea mays GRMZM2G702026 I 0.768
GSMUA_Achr6G29070_001 Musa acuminata GSMUA_Achr6G29070_001 I 0.768
Cla009258 Citrullus lanatus Cla009258 I 0.768
MDP0000294251 Malus domestica MDP0000294251 I 0.768
Pavir.Aa01676 Panicum virgatum Pavir.Aa01676 I 0.768
chr4.CM0006.290.nc Lotus japonicus chr4.CM0006.290.nc I 0.768
LjSGA_069146.1 Lotus japonicus LjSGA_069146.1 I 0.768
Bo4g136370 Brassica oleracea Bo4g136370 I 0.750
Bra028110 Brassica rapa Bra028110 I 0.750
BRADI3G45880 Brachypodium distachyon BRADI3G45880 I 0.750
BRADI5G25767 Brachypodium distachyon BRADI5G25767 I 0.750
F775_00614 Aegilops tauschii F775_00614 I 0.750
GLYMA01G00510 Glycine max GLYMA01G00510 I 0.750
GLYMA05G36430 Glycine max GLYMA05G36430 I 0.750
GRMZM2G441325 Zea mays GRMZM2G441325 I 0.750
GSMUA_Achr10G26140_001 Musa acuminata GSMUA_Achr10G26140_001 I 0.750
GSMUA_Achr11G01610_001 Musa acuminata GSMUA_Achr11G01610_001 I 0.750
Sb03g034850 Sorghum bicolor Sb03g034850 I 0.750
Sb09g025500 Sorghum bicolor Sb09g025500 I 0.750
SELMODRAFT_430287 Selaginella moellendorffii SELMODRAFT_430287 I 0.750
Si000545m.g Setaria italica Si000545m.g I 0.750
Si021589m.g Setaria italica Si021589m.g I 0.750
Traes_2BL_889C1F272 Triticum aestivum Traes_2BL_889C1F272 I 0.750
Ca_05025 Cicer arietinum Ca_05025 I 0.750
Aquca_008_00175 Aquilegia coerulea Aquca_008_00175 I 0.750
Gorai.008G097200 Gossypium raimondii Gorai.008G097200 I 0.750
Pavir.J38128 Panicum virgatum Pavir.J38128 I 0.750
LjSGA_026543.1 Lotus japonicus LjSGA_026543.1 I 0.746
OMERI04G24630 Oryza meridionalis OMERI04G24630 I 0.745
ARF4 Arabidopsis thaliana AT5G60450 I 0.732
Bo2g024860 Brassica oleracea Bo2g024860 I 0.732
BRADI1G46602 Brachypodium distachyon BRADI1G46602 I 0.732
GSMUA_Achr8G13630_001 Musa acuminata GSMUA_Achr8G13630_001 I 0.732
GSMUA_AchrUn_randomG06460_001 Musa acuminata GSMUA_AchrUn_randomG06460_001 I 0.732
PGSC0003DMG400008065 Solanum tuberosum PGSC0003DMG400008065 I 0.732
SELMODRAFT_166729 Selaginella moellendorffii SELMODRAFT_166729 I 0.732
Thhalv10012728m.g Eutrema salsugineum Thhalv10012728m.g I 0.732
AMTR_s00007p00267580 Amborella trichopoda AMTR_s00007p00267580 I 0.714
GLYMA12G07560 Glycine max GLYMA12G07560 I 0.714
GSMUA_Achr3G10240_001 Musa acuminata GSMUA_Achr3G10240_001 I 0.714
MLOC_25537 Hordeum vulgare MLOC_25537 I 0.714
MLOC_64596 Hordeum vulgare MLOC_64596 I 0.714
MTR_4g088210 Medicago truncatula MTR_4g088210 I 0.714
MTR_4g124900 Medicago truncatula MTR_4g124900 I 0.714
OB06G15720 Oryza brachyantha OB06G15720 I 0.714
OPUNC04G11520 Oryza punctata OPUNC04G11520 I 0.714
POPTR_0004s04970 Populus trichocarpa POPTR_0004s04970 I 0.714
POPTR_0011s05830 Populus trichocarpa POPTR_0011s05830 I 0.714
Solyc11g069190.1 Solanum lycopersicum Solyc11g069190.1 I 0.714
TRIUR3_33948 Triticum urartu TRIUR3_33948 I 0.714
29900.m001540 Ricinus communis 29900.m001540 I 0.714
Aquca_027_00067 Aquilegia coerulea Aquca_027_00067 I 0.714
Aquca_051_00062 Aquilegia coerulea Aquca_051_00062 I 0.714
Ciclev10003317m.g Citrus clementina Ciclev10003317m.g I 0.714
Gorai.010G091300 Gossypium raimondii Gorai.010G091300 I 0.714
Lus10024320.g Linum usitatissimum Lus10024320.g I 0.714
Pavir.Eb02716 Panicum virgatum Pavir.Eb02716 I 0.714
SapurV1A.0012s0780 Salix purpurea SapurV1A.0012s0780 I 0.714
LjSGA_059669.1 Lotus japonicus LjSGA_059669.1 I 0.714