CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.0124s0194
(
Boechera stricta
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Bostr.0124s0194
T024821_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.0124s0194.1.p
BBR
1
277
MDDDGFRNWGYYEPAAATFKGNLGLQLMSTIDRNTKPFLPGRDPNLMIGPNGSYHHQEPPIHMSYNWINQQKDKFFNMLPVTTSPNYGNVLPETSSAPSMQMNLHHHHHHHQTEENPVKLEDDIVQTNKKRKTNSKAGSTTKAKKPRKPKDENSNNNTNVSRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR
Bostr.0124s0194.2.p
BBR
1
277
MDDDGFRNWGYYEPAAATFKGNLGLQLMSTIDRNTKPFLPGRDPNLMIGPNGSYHHQEPPIHMSYNWINQQKDKFFNMLPVTTSPNYGNVLPETSSAPSMQMNLHHHHHHHQTEENPVKLEDDIVQTNKKRKTNSKAGSTTKAKKPRKPKDENSNNNTNVSRVKPAKKSVDLVINGVSMDISGLPVPICTCTGAPQQCYRWGCGGWQSACCTTNISMHPLPMSTKRRGARISGRKMSQGAFKKVLEKLASDGFNFGNPIDLKSHWARHGTNKFVTIR
Links
Other
BBR
family TFs
Other
Boechera stricta
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10009978m.g
Capsella rubella
Carubv10009978m.g
N
0.941
Cagra.3501s0027
Capsella grandiflora
Cagra.3501s0027
N
0.919
Thhalv10008428m.g
Eutrema salsugineum
Thhalv10008428m.g
N
0.867
BPC2
Arabidopsis lyrata
fgenesh2_kg.1__1602__AT1G14685.1
I
0.859
BPC2
Arabidopsis thaliana
AT1G14685
N
0.856
Bra016686
Brassica rapa
Bra016686
N
0.852
Bo8g066170
Brassica oleracea
Bo8g066170
N
0.822
Bo8g106640
Brassica oleracea
Bo8g106640
N
0.781
Bra026196
Brassica rapa
Bra026196
N
0.781
Bra026813
Brassica rapa
Bra026813
N
0.770
Bo5g019930
Brassica oleracea
Bo5g019930
N
0.722