Pavir.Eb00173 (Panicum virgatum)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02892 (zf-BED) IPR003656 Pavir.Eb00173 T028464_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00173.1.p BED ZF 5 51
Pavir.Eb00173.2.p BED ZF 5 51

Links

Other BED ZF family TFs
Other Panicum virgatum TFs

22 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb03g001335 Sorghum bicolor Sb03g001335 N 1.000
Pavir.Ea00125 Panicum virgatum Pavir.Ea00125 N 0.975
BGIOSGA002103 Oryza indica BGIOSGA002103 N 0.875
OB01G17890 Oryza brachyantha OB01G17890 N 0.875
ORGLA01G0068100 Oryza glaberrima ORGLA01G0068100 N 0.875
OS01G0222700 Oryza sativa OS01G0222700 N 0.875
MLOC_67613 Hordeum vulgare MLOC_67613 N 0.850
Traes_3DS_5523A155D Triticum aestivum Traes_3DS_5523A155D N 0.850
TRIUR3_07707 Triticum urartu TRIUR3_07707 N 0.850
BRADI2G07297 Brachypodium distachyon BRADI2G07297 N 0.800
evm.TU.supercontig_3.39 Carica papaya evm.TU.supercontig_3.39 N 0.800
GSMUA_Achr8G19830_001 Musa acuminata GSMUA_Achr8G19830_001 N 0.775
PGSC0003DMG400009096 Solanum tuberosum PGSC0003DMG400009096 N 0.775
Solyc03g007510.2 Solanum lycopersicum Solyc03g007510.2 N 0.769
GLYMA06G12991 Glycine max GLYMA06G12991 N 0.700
PRUPE_ppa002763mg Prunus persica PRUPE_ppa002763mg N 0.700
TCM_015328 Theobroma cacao TCM_015328 N 0.700
VIT_16s0050g02440 Vitis vinifera VIT_16s0050g02440 N 0.700
MDP0000411586 Malus domestica MDP0000411586 N 0.700
MDP0000520527 Malus domestica MDP0000520527 N 0.700
PK04121.1 Cannabis sativa PK04121.1 N 0.700