BGIOSGA006236 (Oryza indica)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 BGIOSGA006236 T030870_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.857 0.646
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.851 0.521
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.851 0.521
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.851 0.521
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.851 0.521
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.846 0.896
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.846 0.854
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BGIOSGA006236-PA bHLH 323 370

Links

Other bHLH family TFs
Other Oryza indica TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB02G28530 Oryza brachyantha OB02G28530 I 0.914
OBART02G20940 Oryza barthii OBART02G20940 I 0.914
OGLUM02G21200 Oryza glumaepatula OGLUM02G21200 I 0.914
OLONG_025501 Oryza longistaminata OLONG_025501 I 0.914
OMERI02G20700 Oryza meridionalis OMERI02G20700 I 0.914
ONIVA02G23040 Oryza nivara ONIVA02G23040 I 0.914
OPUNC02G18940 Oryza punctata OPUNC02G18940 I 0.914
ORGLA02G0180000 Oryza glaberrima ORGLA02G0180000 I 0.914
ORUFI02G21960 Oryza rufipogon ORUFI02G21960 I 0.914
OS02G0564700 Oryza sativa OS02G0564700 I 0.914
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I 0.902
GRMZM2G024530 Zea mays GRMZM2G024530 I 0.889
GRMZM2G116785 Zea mays GRMZM2G116785 I 0.889
GRMZM5G839518 Zea mays GRMZM5G839518 I 0.889
Sb04g023320 Sorghum bicolor Sb04g023320 I 0.889
Sb10g006250 Sorghum bicolor Sb10g006250 I 0.889
Si006332m.g Setaria italica Si006332m.g I 0.889
Si016939m.g Setaria italica Si016939m.g I 0.889
Pavir.Aa01634 Panicum virgatum Pavir.Aa01634 I 0.889
Pavir.Ab02747 Panicum virgatum Pavir.Ab02747 I 0.889
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I 0.889
Pavir.J15280 Panicum virgatum Pavir.J15280 I 0.889
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.881
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.881
TCM_037455 Theobroma cacao TCM_037455 I 0.881
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.881
cassava19894.m1 Manihot esculenta cassava19894.m1 I 0.881
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.881
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.881
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.881
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.881
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.881
PK08539.1 Cannabis sativa PK08539.1 I 0.879
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.869
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.869
OBART06G06000 Oryza barthii OBART06G06000 I 0.869
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.869
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.869
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.869
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.869
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.869
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.869
OS06G0193400 Oryza sativa OS06G0193400 I 0.869
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.869
PRUPE_ppa017709mg Prunus persica PRUPE_ppa017709mg I 0.869
Pm027004 Prunus mume Pm027004 I 0.869
29739.m003684 Ricinus communis 29739.m003684 I 0.869
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.869
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.869
GSMUA_Achr3G04630_001 Musa acuminata GSMUA_Achr3G04630_001 I 0.866
Gorai.001G017900 Gossypium raimondii Gorai.001G017900 I 0.860
MDP0000286589 Malus domestica MDP0000286589 N 0.859
UNE10 Arabidopsis thaliana AT4G00050 D 0.857
Bo3g042120 Brassica oleracea Bo3g042120 I 0.857
Bo3g054850 Brassica oleracea Bo3g054850 I 0.857
Bra000560 Brassica rapa Bra000560 I 0.857
Bra037312 Brassica rapa Bra037312 I 0.857
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.857
GLYMA03G04000 Glycine max GLYMA03G04000 I 0.857
GLYMA11G17120 Glycine max GLYMA11G17120 I 0.857
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I 0.857
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I 0.857
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I 0.857
UNE10 Arabidopsis lyrata scaffold_604304.1 I 0.857
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I 0.857
TCM_005607 Theobroma cacao TCM_005607 I 0.857
UNE10 Vitis vinifera VIT_15s0021g02690 I 0.857
Ca_22883 Cicer arietinum Ca_22883 I 0.857
30174.m008814 Ricinus communis 30174.m008814 I 0.857
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I 0.857
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I 0.857
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I 0.857
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I 0.857
Carubv10001567m.g Capsella rubella Carubv10001567m.g I 0.857
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I 0.857
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I 0.857
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I 0.857
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I 0.857
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I 0.857
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I 0.857
MDP0000439540 Malus domestica MDP0000439540 I 0.857
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I 0.857
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I 0.857
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I 0.857
PK20816.1 Cannabis sativa PK20816.1 I 0.857
Bra005969 Brassica rapa Bra005969 I 0.853
ALC Arabidopsis thaliana AT5G67110 I 0.852
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.852
Bra012133 Brassica rapa Bra012133 I 0.852
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.852
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.852
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.852
OBART06G04330 Oryza barthii OBART06G04330 I 0.852
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.852
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.852
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.852
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.852
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.852
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.852
Ca_19269 Cicer arietinum Ca_19269 I 0.852
e_gw1.167.42.1 Physcomitrella patens e_gw1.167.42.1 I 0.852
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.852
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.852
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.852
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.852
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.852
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.852
BIM1 Arabidopsis thaliana AT5G08130 D 0.851
Bo2g161110 Brassica oleracea Bo2g161110 I 0.851
Bo3g004690 Brassica oleracea Bo3g004690 I 0.851
Bo5g020460 Brassica oleracea Bo5g020460 I 0.851
Bo9g174770 Brassica oleracea Bo9g174770 I 0.851
Bra009322 Brassica rapa Bra009322 I 0.851
Bra029354 Brassica rapa Bra029354 I 0.851
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.851
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.851
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.851
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.851
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.851
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.851
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.851
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.851
mgf001137m Mimulus guttatus mgf001137m I 0.851
mgf005849m Mimulus guttatus mgf005849m I 0.851
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.851
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.851
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.851
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.851
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.851
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.851
PK10562.1 Cannabis sativa PK10562.1 I 0.851
LPERR02G17000 Leersia perrieri LPERR02G17000 N 0.848
GSMUA_Achr6G35730_001 Musa acuminata GSMUA_Achr6G35730_001 I 0.847
AMTR_s00065p00184910 Amborella trichopoda AMTR_s00065p00184910 I 0.846
BHLH66 Arabidopsis thaliana AT2G24260 I 0.846
LRL2 Arabidopsis thaliana AT4G30980 D 0.846
BHLH82 Arabidopsis thaliana AT5G58010 I 0.846
BGIOSGA021777 Oryza indica BGIOSGA021777 I 0.846
BGIOSGA029759 Oryza indica BGIOSGA029759 I 0.846
Bo1g011740 Brassica oleracea Bo1g011740 I 0.846
Bo2g028920 Brassica oleracea Bo2g028920 I 0.846
Bo3g018990 Brassica oleracea Bo3g018990 I 0.846
Bo4g154370 Brassica oleracea Bo4g154370 I 0.846
Bo8g099910 Brassica oleracea Bo8g099910 I 0.846
Bo9g133640 Brassica oleracea Bo9g133640 I 0.846
Bra002679 Brassica rapa Bra002679 I 0.846
Bra006788 Brassica rapa Bra006788 I 0.846
Bra007863 Brassica rapa Bra007863 I 0.846
Bra011237 Brassica rapa Bra011237 I 0.846
Bra020398 Brassica rapa Bra020398 I 0.846
Bra032111 Brassica rapa Bra032111 I 0.846
BRADI1G47350 Brachypodium distachyon BRADI1G47350 I 0.846
LRL3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001435 I 0.846
LRL1 Arabidopsis lyrata fgenesh2_kg.4__341__AT2G24260.1 I 0.846
LRL2 Arabidopsis lyrata fgenesh2_kg.7__1084__AT4G30980.1 I 0.846
GLYMA02G36380 Glycine max GLYMA02G36380 I 0.846
GLYMA09G14380 Glycine max GLYMA09G14380 I 0.846
GLYMA15G33020 Glycine max GLYMA15G33020 I 0.846
GLYMA17G08300 Glycine max GLYMA17G08300 I 0.846
GRMZM2G027563 Zea mays GRMZM2G027563 I 0.846
GRMZM2G067654 Zea mays GRMZM2G067654 I 0.846
GSMUA_Achr10G24090_001 Musa acuminata GSMUA_Achr10G24090_001 I 0.846
GSMUA_Achr10G30710_001 Musa acuminata GSMUA_Achr10G30710_001 I 0.846
GSMUA_Achr4G01910_001 Musa acuminata GSMUA_Achr4G01910_001 I 0.846
LPERR02G29460 Leersia perrieri LPERR02G29460 I 0.846
LPERR09G07210 Leersia perrieri LPERR09G07210 I 0.846
MLOC_38567 Hordeum vulgare MLOC_38567 I 0.846
MTR_4g131160 Medicago truncatula MTR_4g131160 I 0.846
OB06G14990 Oryza brachyantha OB06G14990 I 0.846
OBART06G05420 Oryza barthii OBART06G05420 I 0.846
OGLUM02G37030 Oryza glumaepatula OGLUM02G37030 I 0.846
OGLUM06G05610 Oryza glumaepatula OGLUM06G05610 I 0.846
OGLUM09G10750 Oryza glumaepatula OGLUM09G10750 I 0.846
OMERI02G33790 Oryza meridionalis OMERI02G33790 I 0.846
ONIVA02G37880 Oryza nivara ONIVA02G37880 I 0.846
ONIVA06G06250 Oryza nivara ONIVA06G06250 I 0.846
ONIVA09G10010 Oryza nivara ONIVA09G10010 I 0.846
ORGLA02G0311000 Oryza glaberrima ORGLA02G0311000 I 0.846
ORUFI02G37320 Oryza rufipogon ORUFI02G37320 I 0.846
ORUFI06G05560 Oryza rufipogon ORUFI06G05560 I 0.846
OS06G0184000 Oryza sativa OS06G0184000 I 0.846
PGSC0003DMG400007827 Solanum tuberosum PGSC0003DMG400007827 I 0.846
PGSC0003DMG400011133 Solanum tuberosum PGSC0003DMG400011133 I 0.846
POPTR_0018s11800 Populus trichocarpa POPTR_0018s11800 I 0.846
PRUPE_ppa005254mg Prunus persica PRUPE_ppa005254mg I 0.846
Sb02g024750 Sorghum bicolor Sb02g024750 I 0.846
Sb04g035890 Sorghum bicolor Sb04g035890 I 0.846
Sb10g005650 Sorghum bicolor Sb10g005650 I 0.846
SELMODRAFT_422025 Selaginella moellendorffii SELMODRAFT_422025 I 0.846
SELMODRAFT_444782 Selaginella moellendorffii SELMODRAFT_444782 I 0.846
Si017553m.g Setaria italica Si017553m.g I 0.846
Si029708m.g Setaria italica Si029708m.g I 0.846
Solyc12g010170.1 Solanum lycopersicum Solyc12g010170.1 I 0.846
TCM_037077 Theobroma cacao TCM_037077 I 0.846
Traes_6AL_FD6EC5EA9 Triticum aestivum Traes_6AL_FD6EC5EA9 I 0.846
TRIUR3_33768 Triticum urartu TRIUR3_33768 I 0.846
VIT_11s0037g00040 Vitis vinifera VIT_11s0037g00040 I 0.846
Ca_03340 Cicer arietinum Ca_03340 I 0.846
Cla013823 Citrullus lanatus Cla013823 I 0.846
Cla019007 Citrullus lanatus Cla019007 I 0.846
Pm027715 Prunus mume Pm027715 I 0.846
29737.m001209 Ricinus communis 29737.m001209 I 0.846
cassava22164.valid.m1 Manihot esculenta cassava22164.valid.m1 I 0.846
cassava22165.valid.m1 Manihot esculenta cassava22165.valid.m1 I 0.846
Cucsa.132830 Cucumis sativus Cucsa.132830 I 0.846
Cucsa.350940 Cucumis sativus Cucsa.350940 I 0.846
e_gw1.173.38.1 Physcomitrella patens e_gw1.173.38.1 I 0.846
e_gw1.209.40.1 Physcomitrella patens e_gw1.209.40.1 D 0.846
mgf001459m Mimulus guttatus mgf001459m I 0.846
mgf009435m Mimulus guttatus mgf009435m I 0.846
mgf014585m Mimulus guttatus mgf014585m I 0.846
Aquca_016_00200 Aquilegia coerulea Aquca_016_00200 I 0.846
Bostr.26833s0448 Boechera stricta Bostr.26833s0448 I 0.846
Bostr.27895s0056 Boechera stricta Bostr.27895s0056 I 0.846
Bostr.7867s0954 Boechera stricta Bostr.7867s0954 I 0.846
Cagra.0380s0028 Capsella grandiflora Cagra.0380s0028 I 0.846
Cagra.2848s0086 Capsella grandiflora Cagra.2848s0086 I 0.846
Cagra.4091s0032 Capsella grandiflora Cagra.4091s0032 I 0.846
Carubv10005248m.g Capsella rubella Carubv10005248m.g I 0.846
Carubv10023532m.g Capsella rubella Carubv10023532m.g I 0.846
Carubv10028492m.g Capsella rubella Carubv10028492m.g I 0.846
Ciclev10008192m.g Citrus clementina Ciclev10008192m.g I 0.846
Eucgr.C00360 Eucalyptus grandis Eucgr.C00360 I 0.846
Eucgr.C02592 Eucalyptus grandis Eucgr.C02592 I 0.846
evm.TU.contig_30708.1 Carica papaya evm.TU.contig_30708.1 I 0.846
gene10062-v1.0-hybrid Fragaria vesca gene10062-v1.0-hybrid I 0.846
Gorai.009G055200 Gossypium raimondii Gorai.009G055200 I 0.846
Lus10021846.g Linum usitatissimum Lus10021846.g I 0.846
MDP0000121522 Malus domestica MDP0000121522 I 0.846
MDP0000534784 Malus domestica MDP0000534784 I 0.846
orange1.1g012156m.g Citrus sinensis orange1.1g012156m.g I 0.846
Pavir.Aa00205 Panicum virgatum Pavir.Aa00205 I 0.846
Pavir.Ab03158 Panicum virgatum Pavir.Ab03158 I 0.846
Pavir.Ba01914 Panicum virgatum Pavir.Ba01914 I 0.846
Pavir.Bb02117 Panicum virgatum Pavir.Bb02117 I 0.846
Pavir.Da02078 Panicum virgatum Pavir.Da02078 I 0.846
Pavir.J04712 Panicum virgatum Pavir.J04712 I 0.846
SapurV1A.0100s0120 Salix purpurea SapurV1A.0100s0120 I 0.846
SapurV1A.0347s0080 Salix purpurea SapurV1A.0347s0080 I 0.846
Thhalv10000220m.g Eutrema salsugineum Thhalv10000220m.g I 0.846
Thhalv10014212m.g Eutrema salsugineum Thhalv10014212m.g I 0.846
Thhalv10025656m.g Eutrema salsugineum Thhalv10025656m.g I 0.846
PK14040.1 Cannabis sativa PK14040.1 I 0.846
chr6.CM0037.770.nc Lotus japonicus chr6.CM0037.770.nc I 0.846
GLYMA01G15930 Glycine max GLYMA01G15930 I 0.844
mgf005431m Mimulus guttatus mgf005431m I 0.844
Eucgr.H02628 Eucalyptus grandis Eucgr.H02628 N 0.842
MDP0000837139 Malus domestica MDP0000837139 I 0.842
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.840
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.840
TCM_004959 Theobroma cacao TCM_004959 I 0.839
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I 0.839
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I 0.839
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.839
Gorai.012G031100 Gossypium raimondii Gorai.012G031100 I 0.839
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I 0.839
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I 0.839