Pavir.Aa01634 (Panicum virgatum)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Pavir.Aa01634 T050646_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
UNE10
M01705_2.00 		Arabidopsis thaliana
HCACGTGM
KCACGTGD		 PBM
Weirauch et al.(2014)
pTH8112 		0.857 0.646
BIM1
M01710_2.00 		Arabidopsis thaliana
NCRCGTGNNN
NNNCACGYGN		 PBM
Weirauch et al.(2014)
pTH8114 		0.850 0.521
BIM1
M06739_2.00 		Arabidopsis thaliana
CACGTGAYNHNNNH
DNNNDNRTCACGTG		 Dap-seq
OMalley et al.(2016)
BIM1_col_a 		0.850 0.521
BIM1
M06740_2.00 		Arabidopsis thaliana
NVKCACGTGMYHHNHNHNHNNN
NNNDNDNDNDDRKCACGTGMBN		 Dap-seq
OMalley et al.(2016)
BIM1_colamp_a 		0.850 0.521
BIM1
M09787_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$BIM1_01 		0.850 0.521
e_gw1.209.40.1
M01756_2.00 		Physcomitrella patens
NNCACGTGNN
NNCACGTGNN		 PBM
Weirauch et al.(2014)
pTH8070 		0.846 0.896
LRL2
M06738_2.00 		Arabidopsis thaliana
CACGTGSVDMNCACG
CGTGNKHBSCACGTG		 Dap-seq
OMalley et al.(2016)
bHLH69_col_a 		0.846 0.854
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Aa01634.1.p bHLH 321 368
Pavir.Aa01634.2.p bHLH 321 368

Links

Other bHLH family TFs
Other Panicum virgatum TFs

257 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GRMZM5G839518 Zea mays GRMZM5G839518 I 0.914
Sb04g023320 Sorghum bicolor Sb04g023320 I 0.914
Si016939m.g Setaria italica Si016939m.g I 0.914
Pavir.Ab02747 Panicum virgatum Pavir.Ab02747 I 0.914
BRADI3G46200 Brachypodium distachyon BRADI3G46200 I 0.902
PRUPE_ppa017709mg Prunus persica PRUPE_ppa017709mg I 0.894
Pm027004 Prunus mume Pm027004 I 0.894
BGIOSGA006236 Oryza indica BGIOSGA006236 I 0.889
GRMZM2G024530 Zea mays GRMZM2G024530 I 0.889
GRMZM2G116785 Zea mays GRMZM2G116785 I 0.889
OB02G28530 Oryza brachyantha OB02G28530 I 0.889
OBART02G20940 Oryza barthii OBART02G20940 I 0.889
OGLUM02G21200 Oryza glumaepatula OGLUM02G21200 I 0.889
OLONG_025501 Oryza longistaminata OLONG_025501 I 0.889
OMERI02G20700 Oryza meridionalis OMERI02G20700 I 0.889
ONIVA02G23040 Oryza nivara ONIVA02G23040 I 0.889
OPUNC02G18940 Oryza punctata OPUNC02G18940 I 0.889
ORGLA02G0180000 Oryza glaberrima ORGLA02G0180000 I 0.889
ORUFI02G21960 Oryza rufipogon ORUFI02G21960 I 0.889
OS02G0564700 Oryza sativa OS02G0564700 I 0.889
Sb10g006250 Sorghum bicolor Sb10g006250 I 0.889
Si006332m.g Setaria italica Si006332m.g I 0.889
Pavir.Db01966 Panicum virgatum Pavir.Db01966 I 0.889
Pavir.J15280 Panicum virgatum Pavir.J15280 I 0.889
MDP0000286589 Malus domestica MDP0000286589 N 0.884
AMTR_s00129p00124210 Amborella trichopoda AMTR_s00129p00124210 I 0.881
SELMODRAFT_425336 Selaginella moellendorffii SELMODRAFT_425336 I 0.881
TCM_037455 Theobroma cacao TCM_037455 I 0.881
VIT_11s0016g00380 Vitis vinifera VIT_11s0016g00380 I 0.881
cassava19894.m1 Manihot esculenta cassava19894.m1 I 0.881
Aquca_020_00579 Aquilegia coerulea Aquca_020_00579 I 0.881
Ciclev10008008m.g Citrus clementina Ciclev10008008m.g I 0.881
evm.TU.supercontig_82.59 Carica papaya evm.TU.supercontig_82.59 I 0.881
Gorai.009G038500 Gossypium raimondii Gorai.009G038500 I 0.881
orange1.1g010045m.g Citrus sinensis orange1.1g010045m.g I 0.881
PK08539.1 Cannabis sativa PK08539.1 I 0.879
BGIOSGA021743 Oryza indica BGIOSGA021743 I 0.868
LPERR06G05570 Leersia perrieri LPERR06G05570 I 0.868
OBART06G06000 Oryza barthii OBART06G06000 I 0.868
OGLUM06G06280 Oryza glumaepatula OGLUM06G06280 I 0.868
OLONG_013313 Oryza longistaminata OLONG_013313 I 0.868
OMERI06G07190 Oryza meridionalis OMERI06G07190 I 0.868
ONIVA06G06960 Oryza nivara ONIVA06G06960 I 0.868
OPUNC06G05770 Oryza punctata OPUNC06G05770 I 0.868
ORUFI06G06220 Oryza rufipogon ORUFI06G06220 I 0.868
OS06G0193400 Oryza sativa OS06G0193400 I 0.868
POPTR_0006s13790 Populus trichocarpa POPTR_0006s13790 I 0.868
29739.m003684 Ricinus communis 29739.m003684 I 0.868
cassava10497.m1 Manihot esculenta cassava10497.m1 I 0.868
SapurV1A.0249s0140 Salix purpurea SapurV1A.0249s0140 I 0.868
GSMUA_Achr3G04630_001 Musa acuminata GSMUA_Achr3G04630_001 I 0.866
Gorai.001G017900 Gossypium raimondii Gorai.001G017900 I 0.860
UNE10 Arabidopsis thaliana AT4G00050 D 0.857
Bo3g042120 Brassica oleracea Bo3g042120 I 0.857
Bo3g054850 Brassica oleracea Bo3g054850 I 0.857
Bra000560 Brassica rapa Bra000560 I 0.857
Bra037312 Brassica rapa Bra037312 I 0.857
GLYMA01G32890 Glycine max GLYMA01G32890 I 0.857
GLYMA03G04000 Glycine max GLYMA03G04000 I 0.857
GLYMA11G17120 Glycine max GLYMA11G17120 I 0.857
PGSC0003DMG400025976 Solanum tuberosum PGSC0003DMG400025976 I 0.857
POPTR_0002s14430 Populus trichocarpa POPTR_0002s14430 I 0.857
PRUPE_ppa005629mg Prunus persica PRUPE_ppa005629mg I 0.857
UNE10 Arabidopsis lyrata scaffold_604304.1 I 0.857
Solyc01g090790.2 Solanum lycopersicum Solyc01g090790.2 I 0.857
TCM_005607 Theobroma cacao TCM_005607 I 0.857
UNE10 Vitis vinifera VIT_15s0021g02690 I 0.857
Ca_22883 Cicer arietinum Ca_22883 I 0.857
30174.m008814 Ricinus communis 30174.m008814 I 0.857
cassava13956.valid.m1 Manihot esculenta cassava13956.valid.m1 I 0.857
Aquca_035_00175 Aquilegia coerulea Aquca_035_00175 I 0.857
Bostr.14547s0014 Boechera stricta Bostr.14547s0014 I 0.857
Cagra.20893s0010 Capsella grandiflora Cagra.20893s0010 I 0.857
Carubv10001567m.g Capsella rubella Carubv10001567m.g I 0.857
Ciclev10020053m.g Citrus clementina Ciclev10020053m.g I 0.857
Eucgr.D02499 Eucalyptus grandis Eucgr.D02499 I 0.857
evm.TU.supercontig_212.3 Carica papaya evm.TU.supercontig_212.3 I 0.857
gene25546-v1.0-hybrid Fragaria vesca gene25546-v1.0-hybrid I 0.857
Gorai.007G088300 Gossypium raimondii Gorai.007G088300 I 0.857
Gorai.008G106900 Gossypium raimondii Gorai.008G106900 I 0.857
MDP0000439540 Malus domestica MDP0000439540 I 0.857
orange1.1g012387m.g Citrus sinensis orange1.1g012387m.g I 0.857
SapurV1A.0033s0400 Salix purpurea SapurV1A.0033s0400 I 0.857
Thhalv10028687m.g Eutrema salsugineum Thhalv10028687m.g I 0.857
PK20816.1 Cannabis sativa PK20816.1 I 0.857
Bra005969 Brassica rapa Bra005969 I 0.853
ALC Arabidopsis thaliana AT5G67110 I 0.852
BGIOSGA022375 Oryza indica BGIOSGA022375 I 0.852
Bra012133 Brassica rapa Bra012133 I 0.852
ALC Arabidopsis lyrata fgenesh2_kg.8__2705__AT5G67110.1 I 0.852
GRMZM2G017349 Zea mays GRMZM2G017349 I 0.852
LPERR06G03910 Leersia perrieri LPERR06G03910 I 0.852
OBART06G04330 Oryza barthii OBART06G04330 I 0.852
OGLUM06G04430 Oryza glumaepatula OGLUM06G04430 I 0.852
OMERI06G05430 Oryza meridionalis OMERI06G05430 I 0.852
ONIVA06G05510 Oryza nivara ONIVA06G05510 I 0.852
ORGLA06G0039900 Oryza glaberrima ORGLA06G0039900 I 0.852
ORUFI06G04330 Oryza rufipogon ORUFI06G04330 I 0.852
Sb10g004500 Sorghum bicolor Sb10g004500 I 0.852
Ca_19269 Cicer arietinum Ca_19269 I 0.852
e_gw1.167.42.1 Physcomitrella patens e_gw1.167.42.1 I 0.852
Bostr.0568s0133 Boechera stricta Bostr.0568s0133 I 0.852
Carubv10028570m.g Capsella rubella Carubv10028570m.g I 0.852
gene09125-v1.0-hybrid Fragaria vesca gene09125-v1.0-hybrid I 0.852
Pavir.J15575 Panicum virgatum Pavir.J15575 I 0.852
Pavir.J38250 Panicum virgatum Pavir.J38250 I 0.852
Thhalv10004889m.g Eutrema salsugineum Thhalv10004889m.g I 0.852
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I 0.851
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I 0.851
BIM1 Arabidopsis thaliana AT5G08130 D 0.850
Bo2g161110 Brassica oleracea Bo2g161110 I 0.850
Bo3g004690 Brassica oleracea Bo3g004690 I 0.850
Bo5g020460 Brassica oleracea Bo5g020460 I 0.850
Bo9g174770 Brassica oleracea Bo9g174770 I 0.850
Bra009322 Brassica rapa Bra009322 I 0.850
Bra029354 Brassica rapa Bra029354 I 0.850
BRADI3G56340 Brachypodium distachyon BRADI3G56340 I 0.850
MLOC_62335 Hordeum vulgare MLOC_62335 I 0.850
BIM1 Arabidopsis lyrata scaffold_600819.1 I 0.850
Solyc03g114720.2 Solanum lycopersicum Solyc03g114720.2 I 0.850
Traes_6BL_DA93728B3 Triticum aestivum Traes_6BL_DA93728B3 I 0.850
Traes_6DL_D38F3257B Triticum aestivum Traes_6DL_D38F3257B I 0.850
mgf001137m Mimulus guttatus mgf001137m I 0.850
mgf005849m Mimulus guttatus mgf005849m I 0.850
Bostr.13129s0152 Boechera stricta Bostr.13129s0152 I 0.850
Cagra.1365s0019 Capsella grandiflora Cagra.1365s0019 I 0.850
Carubv10000655m.g Capsella rubella Carubv10000655m.g I 0.850
Eucgr.B00645 Eucalyptus grandis Eucgr.B00645 I 0.850
Gorai.006G269200 Gossypium raimondii Gorai.006G269200 I 0.850
Thhalv10013181m.g Eutrema salsugineum Thhalv10013181m.g I 0.850
PK10562.1 Cannabis sativa PK10562.1 I 0.850
GSMUA_Achr6G35730_001 Musa acuminata GSMUA_Achr6G35730_001 I 0.847
AMTR_s00065p00184910 Amborella trichopoda AMTR_s00065p00184910 I 0.846
BHLH66 Arabidopsis thaliana AT2G24260 I 0.846
LRL2 Arabidopsis thaliana AT4G30980 D 0.846
BHLH82 Arabidopsis thaliana AT5G58010 I 0.846
BGIOSGA021777 Oryza indica BGIOSGA021777 I 0.846
BGIOSGA029759 Oryza indica BGIOSGA029759 I 0.846
Bo1g011740 Brassica oleracea Bo1g011740 I 0.846
Bo2g028920 Brassica oleracea Bo2g028920 I 0.846
Bo3g018990 Brassica oleracea Bo3g018990 I 0.846
Bo4g154370 Brassica oleracea Bo4g154370 I 0.846
Bo8g099910 Brassica oleracea Bo8g099910 I 0.846
Bo9g133640 Brassica oleracea Bo9g133640 I 0.846
Bra002679 Brassica rapa Bra002679 I 0.846
Bra006788 Brassica rapa Bra006788 I 0.846
Bra007863 Brassica rapa Bra007863 I 0.846
Bra011237 Brassica rapa Bra011237 I 0.846
Bra020398 Brassica rapa Bra020398 I 0.846
Bra032111 Brassica rapa Bra032111 I 0.846
BRADI1G47350 Brachypodium distachyon BRADI1G47350 I 0.846
LRL3 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001435 I 0.846
LRL1 Arabidopsis lyrata fgenesh2_kg.4__341__AT2G24260.1 I 0.846
LRL2 Arabidopsis lyrata fgenesh2_kg.7__1084__AT4G30980.1 I 0.846
GLYMA02G36380 Glycine max GLYMA02G36380 I 0.846
GLYMA09G14380 Glycine max GLYMA09G14380 I 0.846
GLYMA15G33020 Glycine max GLYMA15G33020 I 0.846
GLYMA17G08300 Glycine max GLYMA17G08300 I 0.846
GRMZM2G027563 Zea mays GRMZM2G027563 I 0.846
GRMZM2G067654 Zea mays GRMZM2G067654 I 0.846
GSMUA_Achr10G24090_001 Musa acuminata GSMUA_Achr10G24090_001 I 0.846
GSMUA_Achr10G30710_001 Musa acuminata GSMUA_Achr10G30710_001 I 0.846
GSMUA_Achr4G01910_001 Musa acuminata GSMUA_Achr4G01910_001 I 0.846
LPERR02G29460 Leersia perrieri LPERR02G29460 I 0.846
LPERR09G07210 Leersia perrieri LPERR09G07210 I 0.846
MLOC_38567 Hordeum vulgare MLOC_38567 I 0.846
MTR_4g131160 Medicago truncatula MTR_4g131160 I 0.846
OB06G14990 Oryza brachyantha OB06G14990 I 0.846
OBART06G05420 Oryza barthii OBART06G05420 I 0.846
OGLUM02G37030 Oryza glumaepatula OGLUM02G37030 I 0.846
OGLUM06G05610 Oryza glumaepatula OGLUM06G05610 I 0.846
OGLUM09G10750 Oryza glumaepatula OGLUM09G10750 I 0.846
OMERI02G33790 Oryza meridionalis OMERI02G33790 I 0.846
ONIVA02G37880 Oryza nivara ONIVA02G37880 I 0.846
ONIVA06G06250 Oryza nivara ONIVA06G06250 I 0.846
ONIVA09G10010 Oryza nivara ONIVA09G10010 I 0.846
ORGLA02G0311000 Oryza glaberrima ORGLA02G0311000 I 0.846
ORUFI02G37320 Oryza rufipogon ORUFI02G37320 I 0.846
ORUFI06G05560 Oryza rufipogon ORUFI06G05560 I 0.846
OS06G0184000 Oryza sativa OS06G0184000 I 0.846
PGSC0003DMG400007827 Solanum tuberosum PGSC0003DMG400007827 I 0.846
PGSC0003DMG400011133 Solanum tuberosum PGSC0003DMG400011133 I 0.846
POPTR_0018s11800 Populus trichocarpa POPTR_0018s11800 I 0.846
PRUPE_ppa005254mg Prunus persica PRUPE_ppa005254mg I 0.846
Sb02g024750 Sorghum bicolor Sb02g024750 I 0.846
Sb04g035890 Sorghum bicolor Sb04g035890 I 0.846
Sb10g005650 Sorghum bicolor Sb10g005650 I 0.846
SELMODRAFT_422025 Selaginella moellendorffii SELMODRAFT_422025 I 0.846
SELMODRAFT_444782 Selaginella moellendorffii SELMODRAFT_444782 I 0.846
Si017553m.g Setaria italica Si017553m.g I 0.846
Si029708m.g Setaria italica Si029708m.g I 0.846
Solyc12g010170.1 Solanum lycopersicum Solyc12g010170.1 I 0.846
TCM_037077 Theobroma cacao TCM_037077 I 0.846
Traes_6AL_FD6EC5EA9 Triticum aestivum Traes_6AL_FD6EC5EA9 I 0.846
TRIUR3_33768 Triticum urartu TRIUR3_33768 I 0.846
VIT_11s0037g00040 Vitis vinifera VIT_11s0037g00040 I 0.846
Ca_03340 Cicer arietinum Ca_03340 I 0.846
Cla013823 Citrullus lanatus Cla013823 I 0.846
Cla019007 Citrullus lanatus Cla019007 I 0.846
Pm027715 Prunus mume Pm027715 I 0.846
29737.m001209 Ricinus communis 29737.m001209 I 0.846
cassava22164.valid.m1 Manihot esculenta cassava22164.valid.m1 I 0.846
cassava22165.valid.m1 Manihot esculenta cassava22165.valid.m1 I 0.846
Cucsa.132830 Cucumis sativus Cucsa.132830 I 0.846
Cucsa.350940 Cucumis sativus Cucsa.350940 I 0.846
e_gw1.173.38.1 Physcomitrella patens e_gw1.173.38.1 I 0.846
e_gw1.209.40.1 Physcomitrella patens e_gw1.209.40.1 D 0.846
mgf001459m Mimulus guttatus mgf001459m I 0.846
mgf009435m Mimulus guttatus mgf009435m I 0.846
mgf014585m Mimulus guttatus mgf014585m I 0.846
Aquca_016_00200 Aquilegia coerulea Aquca_016_00200 I 0.846
Bostr.26833s0448 Boechera stricta Bostr.26833s0448 I 0.846
Bostr.27895s0056 Boechera stricta Bostr.27895s0056 I 0.846
Bostr.7867s0954 Boechera stricta Bostr.7867s0954 I 0.846
Cagra.0380s0028 Capsella grandiflora Cagra.0380s0028 I 0.846
Cagra.2848s0086 Capsella grandiflora Cagra.2848s0086 I 0.846
Cagra.4091s0032 Capsella grandiflora Cagra.4091s0032 I 0.846
Carubv10005248m.g Capsella rubella Carubv10005248m.g I 0.846
Carubv10023532m.g Capsella rubella Carubv10023532m.g I 0.846
Carubv10028492m.g Capsella rubella Carubv10028492m.g I 0.846
Ciclev10008192m.g Citrus clementina Ciclev10008192m.g I 0.846
Eucgr.C00360 Eucalyptus grandis Eucgr.C00360 I 0.846
Eucgr.C02592 Eucalyptus grandis Eucgr.C02592 I 0.846
evm.TU.contig_30708.1 Carica papaya evm.TU.contig_30708.1 I 0.846
gene10062-v1.0-hybrid Fragaria vesca gene10062-v1.0-hybrid I 0.846
Gorai.009G055200 Gossypium raimondii Gorai.009G055200 I 0.846
Lus10021846.g Linum usitatissimum Lus10021846.g I 0.846
MDP0000121522 Malus domestica MDP0000121522 I 0.846
MDP0000534784 Malus domestica MDP0000534784 I 0.846
orange1.1g012156m.g Citrus sinensis orange1.1g012156m.g I 0.846
Pavir.Aa00205 Panicum virgatum Pavir.Aa00205 I 0.846
Pavir.Ab03158 Panicum virgatum Pavir.Ab03158 I 0.846
Pavir.Ba01914 Panicum virgatum Pavir.Ba01914 I 0.846
Pavir.Bb02117 Panicum virgatum Pavir.Bb02117 I 0.846
Pavir.Da02078 Panicum virgatum Pavir.Da02078 I 0.846
Pavir.J04712 Panicum virgatum Pavir.J04712 I 0.846
SapurV1A.0100s0120 Salix purpurea SapurV1A.0100s0120 I 0.846
SapurV1A.0347s0080 Salix purpurea SapurV1A.0347s0080 I 0.846
Thhalv10000220m.g Eutrema salsugineum Thhalv10000220m.g I 0.846
Thhalv10014212m.g Eutrema salsugineum Thhalv10014212m.g I 0.846
Thhalv10025656m.g Eutrema salsugineum Thhalv10025656m.g I 0.846
PK14040.1 Cannabis sativa PK14040.1 I 0.846
chr6.CM0037.770.nc Lotus japonicus chr6.CM0037.770.nc I 0.846
GLYMA01G15930 Glycine max GLYMA01G15930 I 0.844
mgf005431m Mimulus guttatus mgf005431m I 0.844
Eucgr.H02628 Eucalyptus grandis Eucgr.H02628 N 0.842
MDP0000837139 Malus domestica MDP0000837139 I 0.842
MTR_1g019240 Medicago truncatula MTR_1g019240 I 0.840
PGSC0003DMG401007955 Solanum tuberosum PGSC0003DMG401007955 I 0.840
TCM_004959 Theobroma cacao TCM_004959 I 0.839
Ciclev10019786m.g Citrus clementina Ciclev10019786m.g I 0.839
Gorai.001G148300 Gossypium raimondii Gorai.001G148300 I 0.839
Gorai.007G118100 Gossypium raimondii Gorai.007G118100 I 0.839
Gorai.012G031100 Gossypium raimondii Gorai.012G031100 I 0.839
orange1.1g038097m.g Citrus sinensis orange1.1g038097m.g I 0.839
SapurV1A.0321s0050 Salix purpurea SapurV1A.0321s0050 I 0.839