CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PRDM16
(
Loxodonta africana
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
ENSLAFG00000001071
T097207_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825
0.996
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825
0.996
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825
0.996
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSLAFP00000000902
C2H2 ZF
219
240
FRCDECDELFQSKLDLRRHKKY
ENSLAFP00000000902
C2H2 ZF
275
297
HECKDCERMFPNKYSLEQHMIIH
ENSLAFP00000000902
C2H2 ZF
303
325
YKCDQCPKAFNWKSNLIRHQMSH
ENSLAFP00000000902
C2H2 ZF
331
354
FECENCVKVFTDPSNLQRHIRSQH
ENSLAFP00000000902
C2H2 ZF
360
382
HACPDCGKTFATSSGLKQHKHIH
ENSLAFP00000000902
C2H2 ZF
388
410
FICEVCHKSYTQFSNLCRHKRMH
ENSLAFP00000000902
C2H2 ZF
417
438
IKCKDCGQMFSTTSSLNKHRRF
ENSLAFP00000000902
C2H2 ZF
945
967
YTCRYCGKIFPRSANLTRHLRTH
ENSLAFP00000000902
C2H2 ZF
973
996
YRCKYCDRSFSISSNLQRHVRNIH
ENSLAFP00000000902
C2H2 ZF
1002
1024
FKCHLCNRCFGQQTNLDRHLKKH
ENSLAFP00000017156
C2H2 ZF
85
106
FRCDECDELFQSKLDLRRHKKY
ENSLAFP00000017156
C2H2 ZF
141
163
HECKDCERMFPNKYSLEQHMIIH
ENSLAFP00000017156
C2H2 ZF
169
191
YKCDQCPKAFNWKSNLIRHQMSH
ENSLAFP00000017156
C2H2 ZF
197
220
FECENCVKVFTDPSNLQRHIRSQH
ENSLAFP00000017156
C2H2 ZF
226
248
HACPDCGKTFATSSGLKQHKHIH
ENSLAFP00000017156
C2H2 ZF
254
276
FICEVCHKSYTQFSNLCRHKRMH
ENSLAFP00000017156
C2H2 ZF
283
304
IKCKDCGQMFSTTSSLNKHRRF
ENSLAFP00000017156
C2H2 ZF
811
833
YTCRYCGKIFPRSANLTRHLRTH
ENSLAFP00000017156
C2H2 ZF
839
862
YRCKYCDRSFSISSNLQRHVRNIH
ENSLAFP00000017156
C2H2 ZF
868
890
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Loxodonta africana
TFs
35 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
XP_002938538
Xenopus tropicalis
XP_002938538
I
0.826
PRDM16
Otolemur garnettii
ENSOGAG00000005055
I
0.825
ENSPPYG00000001968
Pongo abelii
ENSPPYG00000001968
I
0.825
ENSPSIG00000004093
Pelodiscus sinensis
ENSPSIG00000004093
I
0.825
ENSP00000270722
Macaca fascicularis
ENSP00000270722
I
0.825
PRDM16
Gorilla gorilla
ENSGGOG00000003763
I
0.825
PRDM16
Macaca mulatta
ENSMMUG00000009350
I
0.825
PRDM16
Homo sapiens
ENSG00000142611
D
0.825
PRDM16
Equus caballus
ENSECAG00000017045
I
0.824
PRDM16
Meleagris gallopavo
ENSMGAG00000001857
I
0.823
Brh_R007819
Buceros rhinoceros
Brh_R007819
I
0.823
Gfo_R009744
Geospiza fortis
Gfo_R009744
I
0.823
ENSAPLG00000005898
Anas platyrhynchos
ENSAPLG00000005898
I
0.823
ENSGALG00000001063
Gallus gallus
ENSGALG00000001063
I
0.823
Alligator_sinensis_CCG011602.1
Alligator sinensis
Alligator_sinensis_CCG011602.1
I
0.823
Afo_R003306
Aptenodytes forsteri
Afo_R003306
I
0.823
PRDM16
Bos taurus
ENSBTAG00000018965
I
0.822
ENSP00000417899-D2
Bos grunniens
ENSP00000417899-D2
I
0.822
PRDM16
Canis familiaris
ENSCAFG00000019473
I
0.817
PRDM16
Sus scrofa
ENSSSCG00000021490
I
0.816
ENSLOCG00000005336
Lepisosteus oculatus
ENSLOCG00000005336
I
0.811
Ogr15306
Ophisaurus gracilis
Ogr15306
I
0.802
Aan_R005955
Calypte anna
Aan_R005955
I
0.801
ENSFALG00000009580
Ficedula albicollis
ENSFALG00000009580
I
0.801
PRDM16
Danio rerio
ENSDARG00000078324
I
0.780
ENSGMOG00000015664
Gadus morhua
ENSGMOG00000015664
I
0.779
ENSPFOG00000010341
Poecilia formosa
ENSPFOG00000010341
I
0.774
si:ch211-263k4.2
Oryzias latipes
ENSORLG00000004492
I
0.774
si:ch211-263k4.2
Gasterosteus aculeatus
ENSGACG00000006600
I
0.774
ENSXMAG00000019072
Xiphophorus maculatus
ENSXMAG00000019072
I
0.774
ENSAMXG00000014024
Astyanax mexicanus
ENSAMXG00000014024
I
0.773
ENSONIG00000002121
Oreochromis niloticus
ENSONIG00000002121
I
0.769
si:ch211-263k4.2
Tetraodon nigroviridis
ENSTNIG00000011975
N
0.756
si:ch211-263k4.2
Takifugu rubripes
ENSTRUG00000014772
N
0.756