CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Alligator_sinensis_CCG011602.1
(
Alligator sinensis
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00096 (zf-C2H2)
IPR007087
Alligator_sinensis_CCG011602.1
T133285_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
PRDM16
M10223_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_03
0.825
0.987
PRDM16
M10224_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_04
0.825
0.987
PRDM16
M10225_2.00
Homo sapiens
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
V$PRDM16_05
0.825
0.987
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Alligator_sinensis_CCG011602.1
C2H2 ZF
167
188
FRCEDCDELFQSKLDLRRHKKY
Alligator_sinensis_CCG011602.1
C2H2 ZF
215
237
YECKDCERMFPNKYSLEQHMVIH
Alligator_sinensis_CCG011602.1
C2H2 ZF
243
265
YKCDQCPKAFNWKSNLIRHQMSH
Alligator_sinensis_CCG011602.1
C2H2 ZF
271
294
FECENCVKVFTDPSNLQRHIRSQH
Alligator_sinensis_CCG011602.1
C2H2 ZF
300
322
HACPDCGKTFATSSGLKQHKHIH
Alligator_sinensis_CCG011602.1
C2H2 ZF
328
350
FICEVCHKSYTQFSNLCRHKRMH
Alligator_sinensis_CCG011602.1
C2H2 ZF
357
378
IKCKDCGQMFSTTSSLNKHRRF
Alligator_sinensis_CCG011602.1
C2H2 ZF
880
902
YTCRYCGKIFPRSANLTRHLRTH
Alligator_sinensis_CCG011602.1
C2H2 ZF
908
931
YRCKYCDRSFSISSNLQRHVRNIH
Alligator_sinensis_CCG011602.1
C2H2 ZF
937
959
FKCHLCNRCFGQQTNLDRHLKKH
Links
Other
C2H2 ZF
family TFs
Other
Alligator sinensis
TFs
34 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Afo_R003306
Aptenodytes forsteri
Afo_R003306
I
0.827
Brh_R007819
Buceros rhinoceros
Brh_R007819
I
0.827
ENSGALG00000001063
Gallus gallus
ENSGALG00000001063
I
0.827
Gfo_R009744
Geospiza fortis
Gfo_R009744
I
0.827
PRDM16
Meleagris gallopavo
ENSMGAG00000001857
I
0.827
ENSAPLG00000005898
Anas platyrhynchos
ENSAPLG00000005898
I
0.827
PRDM16
Gorilla gorilla
ENSGGOG00000003763
I
0.825
PRDM16
Macaca mulatta
ENSMMUG00000009350
I
0.825
ENSPSIG00000004093
Pelodiscus sinensis
ENSPSIG00000004093
I
0.825
PRDM16
Homo sapiens
ENSG00000142611
D
0.825
ENSPPYG00000001968
Pongo abelii
ENSPPYG00000001968
I
0.825
ENSP00000270722
Macaca fascicularis
ENSP00000270722
I
0.825
XP_002938538
Xenopus tropicalis
XP_002938538
I
0.824
PRDM16
Bos taurus
ENSBTAG00000018965
I
0.823
PRDM16
Loxodonta africana
ENSLAFG00000001071
I
0.823
ENSP00000417899-D2
Bos grunniens
ENSP00000417899-D2
I
0.823
PRDM16
Otolemur garnettii
ENSOGAG00000005055
I
0.821
PRDM16
Equus caballus
ENSECAG00000017045
I
0.821
PRDM16
Canis familiaris
ENSCAFG00000019473
I
0.818
PRDM16
Sus scrofa
ENSSSCG00000021490
I
0.815
ENSLOCG00000005336
Lepisosteus oculatus
ENSLOCG00000005336
I
0.811
Aan_R005955
Calypte anna
Aan_R005955
I
0.805
ENSFALG00000009580
Ficedula albicollis
ENSFALG00000009580
I
0.805
Ogr15306
Ophisaurus gracilis
Ogr15306
I
0.802
ENSGMOG00000015664
Gadus morhua
ENSGMOG00000015664
I
0.779
PRDM16
Danio rerio
ENSDARG00000078324
I
0.779
ENSAMXG00000014024
Astyanax mexicanus
ENSAMXG00000014024
I
0.777
si:ch211-263k4.2
Gasterosteus aculeatus
ENSGACG00000006600
I
0.774
ENSXMAG00000019072
Xiphophorus maculatus
ENSXMAG00000019072
I
0.774
ENSPFOG00000010341
Poecilia formosa
ENSPFOG00000010341
I
0.774
si:ch211-263k4.2
Oryzias latipes
ENSORLG00000004492
I
0.774
ENSONIG00000002121
Oreochromis niloticus
ENSONIG00000002121
I
0.770
si:ch211-263k4.2
Tetraodon nigroviridis
ENSTNIG00000011975
N
0.756
si:ch211-263k4.2
Takifugu rubripes
ENSTRUG00000014772
N
0.756