Gfo_R010168 (Geospiza fortis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 Gfo_R010168 T135808_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
GLIS3
M02880_2.00 		Homo sapiens
CTTYGTGGGGGGTM
KACCCCCCACRAAG		 SELEX
Jolma et al.(2013)
GLIS3_1 		0.767 0.921
GLIS3
M10169_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_01 		0.767 0.921
GLIS3
M10170_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_Q6_01 		0.767 0.921
GLIS3
M10171_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$ZNF515_Q6 		0.767 0.921
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R010168 C2H2 ZF 316 341
Gfo_R010168 C2H2 ZF 350 377
Gfo_R010168 C2H2 ZF 384 407
Gfo_R010168 C2H2 ZF 413 437
Gfo_R010168 C2H2 ZF 443 467

Links

Other C2H2 ZF family TFs
Other Geospiza fortis TFs

68 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSFALG00000011974 Ficedula albicollis ENSFALG00000011974 I 0.827
GLIS1 Taeniopygia guttata ENSTGUG00000009294 I 0.827
Brh_R013214 Buceros rhinoceros Brh_R013214 I 0.827
Tal_R012308 Tyto alba Tal_R012308 I 0.827
ENSAPLG00000013972 Anas platyrhynchos ENSAPLG00000013972 I 0.825
ENSGALG00000010721 Gallus gallus ENSGALG00000010721 I 0.825
ENSLACG00000012147 Latimeria chalumnae ENSLACG00000012147 I 0.825
GLIS1 Meleagris gallopavo ENSMGAG00000011303 I 0.825
ENSPSIG00000002846 Pelodiscus sinensis ENSPSIG00000002846 I 0.825
Aan_R004053 Calypte anna Aan_R004053 I 0.825
Afo_R001041 Aptenodytes forsteri Afo_R001041 I 0.825
Pvit_11533 Pogona vitticeps Pvit_11533 I 0.816
CapteG111854 Capitella teleta CapteG111854 N 0.801
Ocbimv22014778m.g Octopus bimaculoides Ocbimv22014778m.g I 0.801
ENSTNIG00000009052 Tetraodon nigroviridis ENSTNIG00000009052 N 0.785
LotgiG55425 Lottia gigantea LotgiG55425 N 0.784
ENSLOCG00000003071 Lepisosteus oculatus ENSLOCG00000003071 I 0.779
ENSMEUG00000009882 Macropus eugenii ENSMEUG00000009882 I 0.779
glis1b Danio rerio ENSDARG00000027933 I 0.775
GLIS1 Gasterosteus aculeatus ENSGACG00000012109 I 0.775
ENSGMOG00000018511 Gadus morhua ENSGMOG00000018511 I 0.775
ENSORLG00000003872 Oryzias latipes ENSORLG00000003872 I 0.775
ENSPFOG00000017914 Poecilia formosa ENSPFOG00000017914 I 0.775
ENSXMAG00000013077 Xiphophorus maculatus ENSXMAG00000013077 I 0.775
GLIS1 Cavia porcellus ENSCPOG00000009497 I 0.769
GLIS3 Anolis carolinensis ENSACAG00000003374 I 0.767
ENSAPLG00000014844 Anas platyrhynchos ENSAPLG00000014844 I 0.767
GLIS3 Canis familiaris ENSCAFG00000031499 I 0.767
GLIS3 Callithrix jacchus ENSCJAG00000011083 I 0.767
GLIS3 Cavia porcellus ENSCPOG00000005523 I 0.767
GLIS3 Equus caballus ENSECAG00000020544 I 0.767
GLIS3 Echinops telfairi ENSETEG00000015977 I 0.767
GLIS3 Homo sapiens ENSG00000107249 D 0.767
GLIS3 Gallus gallus ENSGALG00000010180 I 0.767
ENSLOCG00000012972 Lepisosteus oculatus ENSLOCG00000012972 I 0.767
ENSMEUG00000005102 Macropus eugenii ENSMEUG00000005102 I 0.767
GLIS3 Monodelphis domestica ENSMODG00000015403 I 0.767
ENSMPUG00000005095 Mustela putorius furo ENSMPUG00000005095 I 0.767
Glis3 Mus musculus ENSMUSG00000052942 I 0.767
ENSNLEG00000008824 Nomascus leucogenys ENSNLEG00000008824 I 0.767
ENSOANG00000014997 Ornithorhynchus anatinus ENSOANG00000014997 I 0.767
ENSOARG00000013378 Ovis aries ENSOARG00000013378 I 0.767
GLIS3 Otolemur garnettii ENSOGAG00000007376 I 0.767
ENSPANG00000025157 Papio anubis ENSPANG00000025157 I 0.767
ENSPSIG00000005966 Pelodiscus sinensis ENSPSIG00000005966 I 0.767
GLIS3 Pteropus vampyrus ENSPVAG00000001839 I 0.767
Glis3 Rattus norvegicus ENSRNOG00000014768 I 0.767
ENSSTOG00000000302 Ictidomys tridecemlineatus ENSSTOG00000000302 I 0.767
ENSTSYG00000000686 Tarsius syrichta ENSTSYG00000000686 I 0.767
GLIS3 Vicugna pacos ENSVPAG00000005473 I 0.767
Aan_R004381 Calypte anna Aan_R004381 I 0.767
Afo_R016063 Aptenodytes forsteri Afo_R016063 I 0.767
ENSP00000371398 Macaca fascicularis ENSP00000371398 I 0.767
ENSP00000384734-D2 Bos grunniens ENSP00000384734-D2 I 0.767
Myotis_brandtii_GLIS3_10023567 Myotis brandtii Myotis_brandtii_GLIS3_10023567 I 0.767
Ogr17806 Ophisaurus gracilis Ogr17806 I 0.767
Pvit_10484 Pogona vitticeps Pvit_10484 I 0.767
ENSAMXG00000005278 Astyanax mexicanus ENSAMXG00000005278 I 0.766
GLIS1 Tetraodon nigroviridis ENSTNIG00000010694 I 0.766
ENSTRUG00000001198 Takifugu rubripes ENSTRUG00000001198 I 0.766
GLIS3 Taeniopygia guttata ENSTGUG00000005266 I 0.764
SPU_018744 Strongylocentrotus purpuratus SPU_018744 I 0.761
Sakowv30037345m.g Saccoglossus kowalevskii Sakowv30037345m.g I 0.761
GLIS3 Procavia capensis ENSPCAG00000004139 I 0.758
ENSPPYG00000019250 Pongo abelii ENSPPYG00000019250 I 0.758
e_gw.471.22.1 Branchiostoma floridae e_gw.471.22.1 I 0.757
gw.28.157.1 Branchiostoma floridae gw.28.157.1 I 0.757
glis3 Xenopus tropicalis XB-GENE-984727 I 0.757