fgenesh2_pg.scaffold_160000114 (Branchiostoma floridae)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 fgenesh2_pg.scaffold_160000114 T139221_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
sob
M03674_2.00 		Drosophila melanogaster
RCTACYGNRTTACGCV
BGCGTAAYNCRGTAGY		 SELEX
Nitta et al.(2015)
sob_1 		0.805 0.887
sob
M03675_2.00 		Drosophila melanogaster
NGCGTAABNSNRGTAGY
RCTACYNSNVTTACGCN		 SELEX
Nitta et al.(2015)
sob_2 		0.805 0.887
sob
M06088_2.00 		Drosophila melanogaster
GCTWCTGBDNBDV
BHVNHVCAGWAGC		 B1H
Zhu et al.(2011)
sob_SANGER_10_FBgn0004892 		0.805 0.887
sob
M06089_2.00 		Drosophila melanogaster
BDGCTACYGKDBNN
NNVHMCRGTAGCHV		 B1H
Zhu et al.(2011)
sob_SOLEXA_5_FBgn0004892 		0.805 0.887
bowl
M03676_2.00 		Drosophila melanogaster
GCGTAABACNRGKAGYN
NRCTMCYNGTVTTACGC		 SELEX
Nitta et al.(2015)
bowl_1 		0.803 0.870
bowl
M03677_2.00 		Drosophila melanogaster
NGCTACYGTRTTACGCN
NGCGTAAYACRGTAGCN		 SELEX
Nitta et al.(2015)
bowl_2 		0.803 0.870
bowl
M06090_2.00 		Drosophila melanogaster
RCTWCYGK
MCRGWAGY		 B1H
Zhu et al.(2011)
bowl_SANGER_5_FBgn0004893 		0.803 0.870
OSR2
M04521_2.00 		Homo sapiens
NGCTACYGBD
HVCRGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_HT-SELEX 		0.799 0.930
OSR2
M08324_2.00 		Homo sapiens
NBDGCTNCTGN
NCAGNAGCHVN		 ChIP-seq
Schmitges et al.(2016)
Q8N2R0.MEME 		0.799 0.930
OSR2
M08908_2.00 		Homo sapiens
NBHNYWGCTNCTSHDB
VHDSAGNAGCWRNDVN		 Misc
Kulakovskiy et al.(2013)
OSR2_HUMAN.H11MO.0.C 		0.799 0.930
OSR2
M04522_2.00 		Homo sapiens
NGCTACTGND
HNCAGTAGCN		 SELEX
Yin et al.(2017)
OSR2_eDBD_Methyl-HT-SELEX 		0.799 0.930
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_pg.scaffold_160000114 C2H2 ZF 424 446
fgenesh2_pg.scaffold_160000114 C2H2 ZF 452 474
fgenesh2_pg.scaffold_160000114 C2H2 ZF 480 502
fgenesh2_pg.scaffold_160000114 C2H2 ZF 508 530
fgenesh2_pg.scaffold_160000114 C2H2 ZF 536 558

Links

Other C2H2 ZF family TFs
Other Branchiostoma floridae TFs

107 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
estExt_fgenesh2_pg.C_1600105 Branchiostoma floridae estExt_fgenesh2_pg.C_1600105 I 0.827
estExt_fgenesh2_pg.C_1600113 Branchiostoma floridae estExt_fgenesh2_pg.C_1600113 I 0.827
fgenesh2_pg.scaffold_160000107 Branchiostoma floridae fgenesh2_pg.scaffold_160000107 I 0.827
AAEL007453 Aedes aegypti AAEL007453 I 0.805
ACYPI007518 Acyrthosiphon pisum ACYPI007518 I 0.805
ACYPI008391 Acyrthosiphon pisum ACYPI008391 I 0.805
sob Drosophila melanogaster FBgn0004892 D 0.805
GG24427 Drosophila erecta FBgn0116559 I 0.805
GI17769 Drosophila mojavensis FBgn0140510 I 0.805
GL19470 Drosophila persimilis FBgn0157069 I 0.805
GM18136 Drosophila sechellia FBgn0173043 I 0.805
GJ17594 Drosophila virilis FBgn0204764 I 0.805
GK15478 Drosophila willistoni FBgn0217483 I 0.805
GE14841 Drosophila yakuba FBgn0232433 I 0.805
GA25976 Drosophila pseudoobscura FBgn0247353 I 0.805
GB49914 Apis mellifera GB49914 I 0.805
NV12185 Nasonia vitripennis NV12185 I 0.805
SINV17987 Solenopsis invicta SINV17987 I 0.805
CpipJ_CPIJ010652 Culex pipiens CpipJ_CPIJ010652 I 0.803
AAEL008961 Aedes aegypti AAEL008961 I 0.803
ACEP20581 Atta cephalotes ACEP20581 I 0.803
ODR1 Anopheles gambiae AGAP007973 I 0.803
ODR2 Anopheles gambiae AGAP008222 I 0.803
CPIJ010652 Culex quinquefasciatus CPIJ010652 I 0.803
bowl Drosophila melanogaster FBgn0004893 D 0.803
GA10014 Drosophila pseudoobscura FBgn0070073 I 0.803
GF14663 Drosophila ananassae FBgn0091690 I 0.803
GF15254 Drosophila ananassae FBgn0092279 I 0.803
GG24967 Drosophila erecta FBgn0117096 I 0.803
GH13192 Drosophila grimshawi FBgn0120669 I 0.803
GH13710 Drosophila grimshawi FBgn0121186 I 0.803
GI23940 Drosophila mojavensis FBgn0146665 I 0.803
GL18676 Drosophila persimilis FBgn0156277 I 0.803
GM18435 Drosophila sechellia FBgn0173342 I 0.803
GD23254 Drosophila simulans FBgn0194642 I 0.803
GJ21213 Drosophila virilis FBgn0208346 I 0.803
GK14650 Drosophila willistoni FBgn0216656 I 0.803
GE18258 Drosophila yakuba FBgn0235686 I 0.803
GB49901 Apis mellifera GB49901 I 0.803
KGM_20290 Danaus plexippus KGM_20290 I 0.803
L798_02536 Zootermopsis nevadensis L798_02536 I 0.803
MCINX006060 Melitaea cinxia MCINX006060 I 0.803
NV12189 Nasonia vitripennis NV12189 I 0.803
PHUM445550 Pediculus humanus PHUM445550 I 0.803
SINV18115 Solenopsis invicta SINV18115 I 0.803
TC005784 Tribolium castaneum TC005784 I 0.803
TC005788 Tribolium castaneum TC005788 I 0.803
YQE_05719 Dendroctonus ponderosae YQE_05719 I 0.803
Cflo_02191--XP_393879.3_APIME Camponotus floridanus Cflo_02191--XP_393879.3_APIME I 0.803
LCUP002070 Lucilia cuprina LCUP002070 I 0.803
LCUP002077 Lucilia cuprina LCUP002077 I 0.803
AATE001257 Anopheles atroparvus AATE001257 I 0.803
ACOM030727 Anopheles coluzzii ACOM030727 I 0.803
AEPI004813 Anopheles epiroticus AEPI004813 I 0.803
AFAF004720 Anopheles farauti AFAF004720 I 0.803
AFUN006320 Anopheles funestus AFUN006320 I 0.803
AMEC005957 Anopheles melas AMEC005957 I 0.803
AMEM017192 Anopheles merus AMEM017192 I 0.803
AMIN006295 Anopheles minimus AMIN006295 I 0.803
ASTEI01738 Anopheles stephensi ASTEI01738 I 0.803
MDOA005526 Musca domestica MDOA005526 I 0.803
MDOA011451 Musca domestica MDOA011451 I 0.803
GD22744 Drosophila simulans FBgn0194140 I 0.802
DAPPUDRAFT_238529 Daphnia pulex DAPPUDRAFT_238529 I 0.800
PHUM125080 Pediculus humanus PHUM125080 I 0.800
SMAR005255 Strigamia maritima SMAR005255 I 0.800
ENSAMEG00000000519 Ailuropoda melanoleuca ENSAMEG00000000519 I 0.799
OSR2 Canis familiaris ENSCAFG00000000493 I 0.799
OSR2 Callithrix jacchus ENSCJAG00000015627 I 0.799
Osr2 Dipodomys ordii ENSDORG00000011823 I 0.799
OSR2 Equus caballus ENSECAG00000017784 I 0.799
OSR2 Erinaceus europaeus ENSEEUG00000008304 I 0.799
ENSFALG00000005731 Ficedula albicollis ENSFALG00000005731 I 0.799
OSR2 Homo sapiens ENSG00000164920 D 0.799
ENSGALG00000016016 Gallus gallus ENSGALG00000016016 I 0.799
OSR2 Gorilla gorilla ENSGGOG00000006716 I 0.799
OSR2 Microcebus murinus ENSMICG00000004390 I 0.799
OSR2 Macaca mulatta ENSMMUG00000022185 I 0.799
ENSNLEG00000002725 Nomascus leucogenys ENSNLEG00000002725 I 0.799
ENSOARG00000002902 Ovis aries ENSOARG00000002902 I 0.799
OSR2 Otolemur garnettii ENSOGAG00000007928 I 0.799
ENSONIG00000006859 Oreochromis niloticus ENSONIG00000006859 I 0.799
OSR2 Ochotona princeps ENSOPRG00000005325 I 0.799
osr2 Oryzias latipes ENSORLG00000002797 I 0.799
OSR2 Procavia capensis ENSPCAG00000003419 I 0.799
ENSPPYG00000018781 Pongo abelii ENSPPYG00000018781 I 0.799
OSR2 Pan troglodytes ENSPTRG00000020463 I 0.799
OSR2 Pteropus vampyrus ENSPVAG00000004363 I 0.799
ENSSHAG00000007793 Sarcophilus harrisii ENSSHAG00000007793 I 0.799
osr2 Takifugu rubripes ENSTRUG00000011070 I 0.799
ENSTSYG00000013426 Tarsius syrichta ENSTSYG00000013426 I 0.799
OSR2 Tursiops truncatus ENSTTRG00000007477 I 0.799
Cflo_02188--XP_001120905.1_APIME Camponotus floridanus Cflo_02188--XP_001120905.1_APIME I 0.799
ENSMMUP00000029201 Macaca fascicularis ENSMMUP00000029201 I 0.799
XP_002934454 Xenopus tropicalis XP_002934454 I 0.799
ACEP20577 Atta cephalotes ACEP20577 I 0.797
Sakowv30016612m.g Saccoglossus kowalevskii Sakowv30016612m.g I 0.797
DAPPUDRAFT_347540 Daphnia pulex DAPPUDRAFT_347540 I 0.796
SPU_024877 Strongylocentrotus purpuratus SPU_024877 I 0.796
ADAC005347 Anopheles darlingi ADAC005347 I 0.795
ADAC010373 Anopheles darlingi ADAC010373 I 0.795
ISCW005884 Ixodes scapularis ISCW005884 I 0.795
ISCW017921 Ixodes scapularis ISCW017921 I 0.795
L798_02529 Zootermopsis nevadensis L798_02529 I 0.793
PHUM125070 Pediculus humanus PHUM125070 I 0.788
SMAR002904 Strigamia maritima SMAR002904 I 0.786
tetur09g03230 Tetranychus urticae tetur09g03230 I 0.784