nLs.2.1.2.g04589 (Litomosoides sigmodontis)
C2H2 ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00096 (zf-C2H2) IPR007087 nLs.2.1.2.g04589 T155333_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
C55C2.1_CONSTRUCT
M00649_2.00 		PBM CONSTRUCTS
NHYDHHNNN
NNNDDHRDN		 PBM
Narasimhan et al.(2015)
pTH10623 		0.765 0.794
For this family, TFs with SR scores > 0.755 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
nLs.2.1.2.t04589-RA C2H2 ZF 76 98
nLs.2.1.2.t04589-RA C2H2 ZF 104 126
nLs.2.1.2.t04589-RA C2H2 ZF 132 153

Links

Other C2H2 ZF family TFs
Other Litomosoides sigmodontis TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
WUBG_05161 Wuchereria bancrofti WUBG_05161 I 0.827
EEL_0000427701 Elaeophora elaphi EEL_0000427701 I 0.807
TCLT_0000703901 Thelazia callipaeda TCLT_0000703901 I 0.804
nOo.2.0.1.g09798 Onchocerca ochengi nOo.2.0.1.g09798 I 0.804
WBGene00245863 Onchocerca volvulus WBGene00245863 I 0.804
PTRK_0001695200 Parastrongyloides trichosuri PTRK_0001695200 N 0.765
SPAL_0000568700 Strongyloides papillosus SPAL_0000568700 N 0.765
SSTP_0000185400 Strongyloides stercoralis SSTP_0000185400 N 0.765
SMUV_0000156601 Syphacia muris SMUV_0000156601 I 0.765
CRE30071 Caenorhabditis remanei CRE30071 I 0.765
C55C2.1_CONSTRUCT PBM CONSTRUCTS C55C2.1_CONSTRUCT D 0.765
BXY_0687500 Bursaphelenchus xylophilus BXY_0687500 N 0.765
SVE_0408900 Strongyloides venezuelensis SVE_0408900 N 0.765
scrt-1 Caenorhabditis elegans WBGene00016948 I 0.765
L889_g2035 Steinernema feltiae L889_g2035 N 0.764
OESDEN_06135 Oesophagostomum dentatum OESDEN_06135 I 0.761