CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CSP1
(
Arabidopsis thaliana
)
CSD
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00313 (CSD)
IPR002059
AT4G36020
T164271_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Encodes a cold shock domain protein. Involved in cold acclimation by blocking the secondary structure of mRNA which in turn facilitates translation at cold temperature.
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
AT4G36020.1
CSD
11
77
STGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP
AT4G36020.2
CSD
11
77
STGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP
AT4G36020.3
CSD
11
77
STGKVNWFNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP
Links
Other
CSD
family TFs
Other
Arabidopsis thaliana
TFs
19 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Bostr.7867s1467
Boechera stricta
Bostr.7867s1467
N
0.924
CSDP1
Arabidopsis lyrata
fgenesh2_kg.7__465__AT4G36020.1
N
0.879
Thhalv10026001m.g
Eutrema salsugineum
Thhalv10026001m.g
N
0.864
Bo7g117730
Brassica oleracea
Bo7g117730
N
0.833
Bra017742
Brassica rapa
Bra017742
N
0.833
Carubv10006250m.g
Capsella rubella
Carubv10006250m.g
N
0.818
Cagra.2236s0009
Capsella grandiflora
Cagra.2236s0009
N
0.818
Thhalv10022795m.g
Eutrema salsugineum
Thhalv10022795m.g
N
0.818
Bo1g006000
Brassica oleracea
Bo1g006000
N
0.818
Bostr.18351s0255
Boechera stricta
Bostr.18351s0255
N
0.818
Carubv10015336m.g
Capsella rubella
Carubv10015336m.g
N
0.803
Cagra.3126s0019
Capsella grandiflora
Cagra.3126s0019
N
0.803
ATCSP3
Arabidopsis lyrata
fgenesh2_kg.3__3388__AT2G17870.1
N
0.803
Bra011655
Brassica rapa
Bra011655
N
0.788
Bra002099
Brassica rapa
Bra002099
N
0.727
evm.TU.supercontig_6.261
Carica papaya
evm.TU.supercontig_6.261
N
0.727
CSP3
Arabidopsis thaliana
AT2G17870
N
0.727
Bo7g012920
Brassica oleracea
Bo7g012920
N
0.727