CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Carubv10017026m.g
(
Capsella rubella
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Carubv10017026m.g
T202361_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Carubv10017026m
GRAS
171
518
RKPGTKPEALIQIRESVSELGNPIERVGFYFAEALSHKETEPSPAASSSSLEEFILSYKTLSDACPYSKFAHLTANQAILEATSQSQNIHIVDFGIFQGIQWSALLQALATRASGKPIRIRISGIPAPSLGDSPEPSLIATGNRLRDFAAILDLNFEFNPVLTPIQLLTESSFRVDPDEVLVVNFMLELYKLLDETATGVGTALRLARSLNPRIVTLGEYEVSLNRVEFSNRVKNSLRFYSAVFESLEPNLERDSKERSRVERVLFGRRISELVRMDNGLMEEKEQWRVLMEKAGFEPVKPSNYAVSQAKLLLWNYNYSTLYSLVESEPGFISLAWNNVPLLTVSSWR
Links
Other
GRAS
family TFs
Other
Capsella rubella
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10016973m.g
Capsella rubella
Carubv10016973m.g
N
0.939
Bostr.6864s0182
Boechera stricta
Bostr.6864s0182
N
0.906
fgenesh2_kg.5__1404__AT3G50650.1
Arabidopsis lyrata
fgenesh2_kg.5__1404__AT3G50650.1
N
0.892
SCL7
Arabidopsis thaliana
AT3G50650
N
0.878
Thhalv10011122m.g
Eutrema salsugineum
Thhalv10011122m.g
N
0.781
fgenesh2_kg.8__2739__AT5G66770.1
Arabidopsis lyrata
fgenesh2_kg.8__2739__AT5G66770.1
N
0.746
Bostr.0568s0096
Boechera stricta
Bostr.0568s0096
N
0.745
SCL4
Arabidopsis thaliana
AT5G66770
N
0.738
Bra012102
Brassica rapa
Bra012102
N
0.733
Thhalv10003860m.g
Eutrema salsugineum
Thhalv10003860m.g
N
0.714