CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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evm.TU.supercontig_66.59
(
Carica papaya
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
evm.TU.supercontig_66.59
T202532_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
evm.model.supercontig_66.59
GRAS
1
169
MKISDTLRSVRSLHPSIVTLVEHESCSRSTPRSFLSLFMESLQYFAAMFDSLEDCLPLESAERLSIEKNHLGKEIKSMLNYGDDHHHEKIETWKGRMESHGFSGVEVSSRSMMQAKLLLKMRTHYCPLQFGGENNYINGGGFRVFGRDEGKAISLGWQGRCLLTASAWR
Links
Other
GRAS
family TFs
Other
Carica papaya
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
POPTR_0013s11930
Populus trichocarpa
POPTR_0013s11930
N
0.738
POPTR_0019s11540
Populus trichocarpa
POPTR_0019s11540
N
0.725
29728.m000844
Ricinus communis
29728.m000844
N
0.725
cassava27916.m1
Manihot esculenta
cassava27916.m1
N
0.725
PRUPE_ppa017519mg
Prunus persica
PRUPE_ppa017519mg
N
0.718
TCM_036707
Theobroma cacao
TCM_036707
N
0.718
Pm022208
Prunus mume
Pm022208
N
0.718
cassava25355.m1
Manihot esculenta
cassava25355.m1
N
0.705