CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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cassava25355.m1
(
Manihot esculenta
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
cassava25355.m1
T202071_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
cassava25355.m1
GRAS
20
403
LIHLLLITATAVDENNLDTALENLTELYQSVSLTGDSVQRVVVYFADALSARILTPKSPFYDMIMKEPTSEEKFLAFTDLYRVSPYYQLAHFTANQAILEAFEKEEESNNRALHVIDFDVSYGFQWPSLIQSLSEKATTGNQVSLRITGYGRSLEELQETESRLVSFTKGFRNLIFEFQGLLRGSSKLMNPRKKKNETVAVNLIFHLNTLNEFLKLSDTLNLIHSLNPSIVVLVEQEGIRNPGSFLSRFMESLHYFAAMFDSLEDCLPLESSERLSVEKNHLGKEIKSMLNYDKDNNDNDSKCSRYEKMETWKGRMESHGFSGIKLSSKTLIQAKLLLKIRTHYSSLQFDGESSNGFRVFERDEGRAISLGWQDRSLLTASAWH
Links
Other
GRAS
family TFs
Other
Manihot esculenta
TFs
30 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
cassava27916.m1
Manihot esculenta
cassava27916.m1
N
0.854
POPTR_0013s11930
Populus trichocarpa
POPTR_0013s11930
N
0.820
29728.m000844
Ricinus communis
29728.m000844
N
0.819
POPTR_0019s11540
Populus trichocarpa
POPTR_0019s11540
N
0.798
SapurV1A.0179s0200
Salix purpurea
SapurV1A.0179s0200
N
0.784
TCM_036707
Theobroma cacao
TCM_036707
N
0.781
SapurV1A.2874s0010
Salix purpurea
SapurV1A.2874s0010
N
0.781
PRUPE_ppa017519mg
Prunus persica
PRUPE_ppa017519mg
N
0.770
Pm022208
Prunus mume
Pm022208
N
0.770
Gorai.009G289600
Gossypium raimondii
Gorai.009G289600
N
0.767
Ciclev10003213m.g
Citrus clementina
Ciclev10003213m.g
N
0.765
Eucgr.F02630
Eucalyptus grandis
Eucgr.F02630
N
0.765
evm.TU.supercontig_66.60
Carica papaya
evm.TU.supercontig_66.60
N
0.762
orange1.1g041748m.g
Citrus sinensis
orange1.1g041748m.g
N
0.756
MDP0000203826
Malus domestica
MDP0000203826
N
0.747
MDP0000162468
Malus domestica
MDP0000162468
N
0.742
MDP0000169115
Malus domestica
MDP0000169115
N
0.742
MDP0000512470
Malus domestica
MDP0000512470
N
0.742
chr5.LjT08L18.130.nd
Lotus japonicus
chr5.LjT08L18.130.nd
N
0.742
GLYMA10G35920
Glycine max
GLYMA10G35920
N
0.737
GLYMA20G31680
Glycine max
GLYMA20G31680
N
0.737
gene27489-v1.0-hybrid
Fragaria vesca
gene27489-v1.0-hybrid
N
0.728
GLYMA02G08241
Glycine max
GLYMA02G08241
N
0.726
Gorai.005G075100
Gossypium raimondii
Gorai.005G075100
N
0.715
Ca_04298
Cicer arietinum
Ca_04298
N
0.711
mgf023389m
Mimulus guttatus
mgf023389m
N
0.711
MTR_1g096030
Medicago truncatula
MTR_1g096030
N
0.709
GLYMA16G27310
Glycine max
GLYMA16G27310
N
0.706
evm.TU.supercontig_66.59
Carica papaya
evm.TU.supercontig_66.59
N
0.705
Lus10014822.g
Linum usitatissimum
Lus10014822.g
N
0.703