CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Gorai.009G289600
(
Gossypium raimondii
)
GRAS
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03514 (GRAS)
IPR005202
Gorai.009G289600
T202656_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Gorai.009G289600.1
GRAS
71
452
LIHLLLITATSVDENNVNSALDNLTQLYQSVSLMGDSVQRVVAYFADGLVARLLTRKSPFYDMIMKEPTAEEEFLAFTCLYRVSPYYQFAHFTANQAIIEAYEKEEEFNNRALHVIDFDVAYGFQWPSLIQSLSEKASGGNRISLRLTGFGASFAELQETENRLVSFAKGFRNLVFEFQGLLRGSKLTNLRKKKNETVAVNLVFHLNTLNNSMKISDTLKSVRSHRPSIVMLVEQEGGRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESAERLSIEKNHLGKEIKSMINCDKDEENNKSSSRYEKMETWKSRMESHGFEGTKLSSKCLIQAKLLLKITTHYCPLQCEGEVNGGFRVFERDEAKALSLGWQDRCLLTASAWQ
Links
Other
GRAS
family TFs
Other
Gossypium raimondii
TFs
31 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
TCM_036707
Theobroma cacao
TCM_036707
N
0.896
POPTR_0013s11930
Populus trichocarpa
POPTR_0013s11930
N
0.851
POPTR_0019s11540
Populus trichocarpa
POPTR_0019s11540
N
0.843
PRUPE_ppa017519mg
Prunus persica
PRUPE_ppa017519mg
N
0.826
Pm022208
Prunus mume
Pm022208
N
0.820
cassava27916.m1
Manihot esculenta
cassava27916.m1
N
0.817
SapurV1A.0179s0200
Salix purpurea
SapurV1A.0179s0200
N
0.806
MDP0000203826
Malus domestica
MDP0000203826
N
0.803
SapurV1A.2874s0010
Salix purpurea
SapurV1A.2874s0010
N
0.803
29728.m000844
Ricinus communis
29728.m000844
N
0.792
MDP0000162468
Malus domestica
MDP0000162468
N
0.781
MDP0000169115
Malus domestica
MDP0000169115
N
0.781
MDP0000512470
Malus domestica
MDP0000512470
N
0.781
Eucgr.F02630
Eucalyptus grandis
Eucgr.F02630
N
0.775
gene27489-v1.0-hybrid
Fragaria vesca
gene27489-v1.0-hybrid
N
0.773
cassava25355.m1
Manihot esculenta
cassava25355.m1
N
0.767
Ciclev10003213m.g
Citrus clementina
Ciclev10003213m.g
N
0.767
orange1.1g041748m.g
Citrus sinensis
orange1.1g041748m.g
N
0.761
GLYMA10G35920
Glycine max
GLYMA10G35920
N
0.753
VIT_18s0076g00200
Vitis vinifera
VIT_18s0076g00200
N
0.745
GLYMA20G31680
Glycine max
GLYMA20G31680
N
0.744
chr5.LjT08L18.130.nd
Lotus japonicus
chr5.LjT08L18.130.nd
N
0.742
Gorai.005G075100
Gossypium raimondii
Gorai.005G075100
N
0.739
Lus10014822.g
Linum usitatissimum
Lus10014822.g
N
0.736
Ca_04298
Cicer arietinum
Ca_04298
N
0.728
GLYMA02G08241
Glycine max
GLYMA02G08241
N
0.719
MTR_1g096030
Medicago truncatula
MTR_1g096030
N
0.719
Aquca_023_00050
Aquilegia coerulea
Aquca_023_00050
N
0.713
Lus10017908.g
Linum usitatissimum
Lus10017908.g
N
0.713
GLYMA16G27310
Glycine max
GLYMA16G27310
N
0.711
mgf023389m
Mimulus guttatus
mgf023389m
N
0.708