RHOXF1 (Homo sapiens)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00046 (Homeobox) IPR001356 ENSG00000101883 T209781_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RHOXF1
M03089_2.00		 Homo sapiens
RGATNAKCY
RGMTNATCY		 SELEX
Jolma et al.(2013)
RHOXF1_1		 (Direct) (Direct)
RHOXF1
M03090_2.00		 Homo sapiens
NTRAKCCN
NGGMTYAN		 SELEX
Jolma et al.(2013)
RHOXF1_2		 (Direct) (Direct)
RHOXF1
M03091_2.00		 Homo sapiens
VGMTHAKCC
GGMTDAKCB		 SELEX
Jolma et al.(2013)
RHOXF1_3		 (Direct) (Direct)
RHOXF1
M03092_2.00		 Homo sapiens
NTRAKCCH
DGGMTYAN		 SELEX
Jolma et al.(2013)
RHOXF1_4		 (Direct) (Direct)
RHOXF1
M04947_2.00		 Homo sapiens
NTRATCCN
NGGATYAN		 SELEX
Yin et al.(2017)
RHOXF1_FL_HT-SELEX		 (Direct) (Direct)
RHOXF1
M04948_2.00		 Homo sapiens
NTRATCCN
NGGATYAN		 SELEX
Yin et al.(2017)
RHOXF1_FL_Methyl-HT-SELEX		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
dharma
M02080_2.00 		Danio rerio
NNRAKCY
RGMTYNN		 PBM
Weirauch et al.(2014)
pTH6530 		0.670 0.561
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSP00000217999 Homeodomain 104 160

Links

Other Homeodomain family TFs
Other Homo sapiens TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
RHOXF1 Gorilla gorilla ENSGGOG00000016112 I 0.834
ENSPPYG00000020680 Pongo abelii ENSPPYG00000020680 I 0.833
ENSCSAG00000018344 Chlorocebus sabaeus ENSCSAG00000018344 I 0.685
ENSMMUG00000013600 Macaca mulatta ENSMMUG00000013600 I 0.685
ENSPANG00000002928 Papio anubis ENSPANG00000002928 I 0.685
ENSMMUP00000017877 Macaca fascicularis ENSMMUP00000017877 I 0.685
dharma Danio rerio ENSDARG00000040955 D 0.670
dharma Tetraodon nigroviridis ENSTNIG00000000233 I 0.670
ENSAMXG00000010364 Astyanax mexicanus ENSAMXG00000010364 I 0.668
Obox8 Mus musculus ENSMUSG00000099216 I 0.647
CapteG167382 Capitella teleta CapteG167382 I 0.637
ENSECAG00000010376 Equus caballus ENSECAG00000010376 I 0.632
XP_002165604.1 Hydra magnipapillata XP_002165604.1 I 0.626
ENSDNOG00000034518 Dasypus novemcinctus ENSDNOG00000034518 I 0.614
Rhox9 Mus musculus ENSMUSG00000068048 I 0.612
ENSMUSG00000097436 Mus musculus ENSMUSG00000097436 I 0.612
ENSMLUG00000022338 Myotis lucifugus ENSMLUG00000022338 I 0.611
RHOXF1 Callithrix jacchus ENSCJAG00000004938 I 0.607
Minc05447 Meloidogyne incognita Minc05447 I 0.605
genemark-nMf.1.1.scaf01072-processed-gene-0.4 Meloidogyne floridensis genemark-nMf.1.1.scaf01072-processed-gene-0.4 I 0.605
ENSGMOG00000001349 Gadus morhua ENSGMOG00000001349 I 0.603
MhA1_Contig214.frz3.gene13 Meloidogyne hapla MhA1_Contig214.frz3.gene13 I 0.603
nDi.2.2.2.g05194 Dirofilaria immitis nDi.2.2.2.g05194 I 0.603
ENSTNIG00000009078 Tetraodon nigroviridis ENSTNIG00000009078 I 0.601
AABR07002351.2 Rattus norvegicus ENSRNOG00000060136 I 0.600
PTRK_0000465700 Parastrongyloides trichosuri PTRK_0000465700 I 0.600
RSKR_0000763400 Rhabditophanes kr3021 RSKR_0000763400 I 0.600
SPAL_0000383900 Strongyloides papillosus SPAL_0000383900 I 0.600
SSTP_0000876100 Strongyloides stercoralis SSTP_0000876100 I 0.600
SVE_0783800 Strongyloides venezuelensis SVE_0783800 I 0.600
ENSNLEG00000000972 Nomascus leucogenys ENSNLEG00000000972 I 0.599
ENSOARG00000014869 Ovis aries ENSOARG00000014869 I 0.599