CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Hdx
(
Mus musculus
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00046 (Homeobox)
IPR001356
ENSMUSG00000034551
T212477_2.00
Ensembl (2018-Dec-8)
Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in enteric nervous system. Orthologous to human HDX (highly divergent homeobox). [provided by Alliance of Genome Resources, Apr 2022]
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
Hdx
M00463_2.00
Mus musculus
HNWYHNN
NNDRWND
PBM
Berger et al.(2008)
Hdx_3845
(Direct)
(Direct)
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
HDX
M01246_2.00
Homo sapiens
HNNNNNN
NNNNNND
PBM
Lambert et al.(2019)
pTH11271
0.867
0.991
For this family, TFs with SR scores >
0.599
will likely have a similar motif
Experimental Constructs
Motif ID
Domain
From
To
Sequence
M00463_2.00
Homeodomain
2
60
NLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS
M00463_2.00
Homeodomain
439
498
QDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVAIELNVDCEIVRTWIGNRRRKYRL
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSMUSP00000043482
Homeodomain
381
440
QDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVAIELNVDCEIVRTWIGNRRRKYRL
ENSMUSP00000109049
Homeodomain
2
60
NLRSVFTVEQQRILQRYYENGMTNQSKNCFQLILQCAQETKLDFSVVRTWVGNKRRKMS
ENSMUSP00000109049
Homeodomain
439
498
QDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVAIELNVDCEIVRTWIGNRRRKYRL
Links
Other
Homeodomain
family TFs
Other
Mus musculus
TFs
61 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ENSPPYG00000020514
Pongo abelii
ENSPPYG00000020514
I
0.867
ENSPSIG00000003320
Pelodiscus sinensis
ENSPSIG00000003320
I
0.867
HDX
Pan troglodytes
ENSPTRG00000022065
I
0.867
HDX
Sorex araneus
ENSSARG00000009351
I
0.867
ENSPANG00000014327
Papio anubis
ENSPANG00000014327
I
0.867
HDX
Oryctolagus cuniculus
ENSOCUG00000000903
I
0.867
ENSMPUG00000006315
Mustela putorius furo
ENSMPUG00000006315
I
0.867
ENSNLEG00000002624
Nomascus leucogenys
ENSNLEG00000002624
I
0.867
ENSOANG00000021386
Ornithorhynchus anatinus
ENSOANG00000021386
N
0.867
ENSOARG00000001832
Ovis aries
ENSOARG00000001832
I
0.867
ENSSHAG00000014376
Sarcophilus harrisii
ENSSHAG00000014376
I
0.867
HDX
Taeniopygia guttata
ENSTGUG00000002499
I
0.867
Cmyd_10021519
Chelonia mydas
Cmyd_10021519
I
0.867
ENSP00000297977
Macaca fascicularis
ENSP00000297977
I
0.867
Gfo_R008526
Geospiza fortis
Gfo_R008526
I
0.867
hdx
Xenopus tropicalis
XB-GENE-853748
I
0.867
Brh_R002803
Buceros rhinoceros
Brh_R002803
I
0.867
Alligator_sinensis_CCG017359.1
Alligator sinensis
Alligator_sinensis_CCG017359.1
I
0.867
ENSTSYG00000009619
Tarsius syrichta
ENSTSYG00000009619
I
0.867
HDX
Vicugna pacos
ENSVPAG00000003255
I
0.867
Aan_R004747
Calypte anna
Aan_R004747
I
0.867
Afo_R014150
Aptenodytes forsteri
Afo_R014150
I
0.867
HDX
Monodelphis domestica
ENSMODG00000014307
I
0.867
HDX
Otolemur garnettii
ENSOGAG00000031446
I
0.867
ENSFALG00000004050
Ficedula albicollis
ENSFALG00000004050
I
0.867
HDX
Echinops telfairi
ENSETEG00000018031
I
0.867
HDX
Felis catus
ENSFCAG00000005781
I
0.867
HDX
Macaca mulatta
ENSMMUG00000020536
I
0.867
HDX
Gallus gallus
ENSGALG00000007041
I
0.867
HDX
Equus caballus
ENSECAG00000024862
I
0.867
ENSCSAG00000010546
Chlorocebus sabaeus
ENSCSAG00000010546
I
0.867
ENSAPLG00000007946
Anas platyrhynchos
ENSAPLG00000007946
I
0.867
HDX
Canis familiaris
ENSCAFG00000017380
I
0.867
HDX
Callithrix jacchus
ENSCJAG00000008295
I
0.867
HDX
Cavia porcellus
ENSCPOG00000014501
I
0.867
HDX
Gorilla gorilla
ENSGGOG00000005551
I
0.867
HDX
Homo sapiens
ENSG00000165259
D
0.867
HDX
Loxodonta africana
ENSLAFG00000028655
I
0.867
HDX
Meleagris gallopavo
ENSMGAG00000004732
I
0.867
HDX
Tursiops truncatus
ENSTTRG00000000100
I
0.866
ENSMLUG00000027800
Myotis lucifugus
ENSMLUG00000027800
N
0.866
HDX
Erinaceus europaeus
ENSEEUG00000011626
I
0.866
HDX
Anolis carolinensis
ENSACAG00000014116
I
0.865
Ogr06876
Ophisaurus gracilis
Ogr06876
I
0.865
Pvit_02951
Pogona vitticeps
Pvit_02951
I
0.865
Hdx
Rattus norvegicus
ENSRNOG00000037799
I
0.840
ENSLACG00000001553
Latimeria chalumnae
ENSLACG00000001553
I
0.839
hdx
Danio rerio
ENSDARG00000079382
I
0.816
ENSLOCG00000015046
Lepisosteus oculatus
ENSLOCG00000015046
I
0.812
ENSGMOG00000004501
Gadus morhua
ENSGMOG00000004501
I
0.692
Myotis_brandtii_HDX_10020373
Myotis brandtii
Myotis_brandtii_HDX_10020373
I
0.685
rps6kal
Tetraodon nigroviridis
ENSTNIG00000015774
I
0.680
ENSPFOG00000004291
Poecilia formosa
ENSPFOG00000004291
I
0.678
ENSXMAG00000011901
Xiphophorus maculatus
ENSXMAG00000011901
I
0.678
hdx
Oryzias latipes
ENSORLG00000008466
I
0.677
hdx
Takifugu rubripes
ENSTRUG00000008150
I
0.672
ENSONIG00000017662
Oreochromis niloticus
ENSONIG00000017662
I
0.664
hdx
Gasterosteus aculeatus
ENSGACG00000018543
I
0.664
ENSPMAG00000004328
Petromyzon marinus
ENSPMAG00000004328
I
0.637
HDX
Pteropus vampyrus
ENSPVAG00000015095
I
0.624
ENSMEUG00000003811
Macropus eugenii
ENSMEUG00000003811
I
0.624