Gfo_R008526 (Geospiza fortis)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Gfo_R008526 T226202_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HDX
M01246_2.00 		Homo sapiens
HNNNNNN
NNNNNND		 PBM
Lambert et al.(2019)
pTH11271 		0.867 0.991
Hdx
M00463_2.00 		Mus musculus
HNWYHNN
NNDRWND		 PBM
Berger et al.(2008)
Hdx_3845 		0.867 0.991
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gfo_R008526 Homeodomain 2 60
Gfo_R008526 Homeodomain 393 452

Links

Other Homeodomain family TFs
Other Geospiza fortis TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAPLG00000007946 Anas platyrhynchos ENSAPLG00000007946 I 0.867
HDX Canis familiaris ENSCAFG00000017380 I 0.867
HDX Callithrix jacchus ENSCJAG00000008295 I 0.867
HDX Cavia porcellus ENSCPOG00000014501 I 0.867
ENSCSAG00000010546 Chlorocebus sabaeus ENSCSAG00000010546 I 0.867
HDX Equus caballus ENSECAG00000024862 I 0.867
HDX Echinops telfairi ENSETEG00000018031 I 0.867
ENSFALG00000004050 Ficedula albicollis ENSFALG00000004050 I 0.867
HDX Felis catus ENSFCAG00000005781 I 0.867
HDX Homo sapiens ENSG00000165259 D 0.867
HDX Gallus gallus ENSGALG00000007041 I 0.867
HDX Gorilla gorilla ENSGGOG00000005551 I 0.867
HDX Loxodonta africana ENSLAFG00000028655 I 0.867
HDX Meleagris gallopavo ENSMGAG00000004732 I 0.867
HDX Macaca mulatta ENSMMUG00000020536 I 0.867
HDX Monodelphis domestica ENSMODG00000014307 I 0.867
ENSMPUG00000006315 Mustela putorius furo ENSMPUG00000006315 I 0.867
Hdx Mus musculus ENSMUSG00000034551 D 0.867
ENSNLEG00000002624 Nomascus leucogenys ENSNLEG00000002624 I 0.867
ENSOARG00000001832 Ovis aries ENSOARG00000001832 I 0.867
HDX Oryctolagus cuniculus ENSOCUG00000000903 I 0.867
HDX Otolemur garnettii ENSOGAG00000031446 I 0.867
ENSPANG00000014327 Papio anubis ENSPANG00000014327 I 0.867
ENSPPYG00000020514 Pongo abelii ENSPPYG00000020514 I 0.867
ENSPSIG00000003320 Pelodiscus sinensis ENSPSIG00000003320 I 0.867
HDX Pan troglodytes ENSPTRG00000022065 I 0.867
HDX Sorex araneus ENSSARG00000009351 I 0.867
ENSSHAG00000014376 Sarcophilus harrisii ENSSHAG00000014376 I 0.867
HDX Taeniopygia guttata ENSTGUG00000002499 I 0.867
ENSTSYG00000009619 Tarsius syrichta ENSTSYG00000009619 I 0.867
HDX Vicugna pacos ENSVPAG00000003255 I 0.867
Aan_R004747 Calypte anna Aan_R004747 I 0.867
Afo_R014150 Aptenodytes forsteri Afo_R014150 I 0.867
Alligator_sinensis_CCG017359.1 Alligator sinensis Alligator_sinensis_CCG017359.1 I 0.867
Brh_R002803 Buceros rhinoceros Brh_R002803 I 0.867
Cmyd_10021519 Chelonia mydas Cmyd_10021519 I 0.867
ENSP00000297977 Macaca fascicularis ENSP00000297977 I 0.867
HDX Erinaceus europaeus ENSEEUG00000011626 I 0.866
HDX Tursiops truncatus ENSTTRG00000000100 I 0.866
HDX Anolis carolinensis ENSACAG00000014116 I 0.865
Ogr06876 Ophisaurus gracilis Ogr06876 I 0.865
Pvit_02951 Pogona vitticeps Pvit_02951 I 0.865
hdx Xenopus tropicalis XB-GENE-853748 I 0.864
Hdx Rattus norvegicus ENSRNOG00000037799 I 0.840
ENSLACG00000001553 Latimeria chalumnae ENSLACG00000001553 I 0.839
hdx Danio rerio ENSDARG00000079382 I 0.816
ENSLOCG00000015046 Lepisosteus oculatus ENSLOCG00000015046 I 0.812
ENSGMOG00000004501 Gadus morhua ENSGMOG00000004501 I 0.692
Myotis_brandtii_HDX_10020373 Myotis brandtii Myotis_brandtii_HDX_10020373 I 0.685
rps6kal Tetraodon nigroviridis ENSTNIG00000015774 I 0.680
ENSPFOG00000004291 Poecilia formosa ENSPFOG00000004291 I 0.678
ENSXMAG00000011901 Xiphophorus maculatus ENSXMAG00000011901 I 0.678
hdx Oryzias latipes ENSORLG00000008466 I 0.677
hdx Takifugu rubripes ENSTRUG00000008150 I 0.672
hdx Gasterosteus aculeatus ENSGACG00000018543 I 0.664
ENSONIG00000017662 Oreochromis niloticus ENSONIG00000017662 I 0.664
ENSPMAG00000004328 Petromyzon marinus ENSPMAG00000004328 I 0.637
ENSMEUG00000003811 Macropus eugenii ENSMEUG00000003811 I 0.624
HDX Pteropus vampyrus ENSPVAG00000015095 I 0.624