Brh_R000003 (Buceros rhinoceros)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Brh_R000003 T225297_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hoxa5
M00478_2.00 		Mus musculus
NTAATNDNN
NNHNATTAN		 PBM
Berger et al.(2008)
Hoxa5_3415 		0.112 1.000
Hoxb5
M00480_2.00 		Mus musculus
NWDWTNNNN
NNNNAWHWN		 PBM
Berger et al.(2008)
Hoxb5_3122 		0.112 1.000
HOXB5
M03125_2.00 		Homo sapiens
NNKAATKRNN
NNYMATTMNN		 SELEX
Jolma et al.(2013)
HOXB5_1 		0.112 1.000
HOXA5
M04968_2.00 		Homo sapiens
STAATKRS
SYMATTAS		 SELEX
Yin et al.(2017)
HOXA5_eDBD_HT-SELEX 		0.112 1.000
HOXA5
M04971_2.00 		Homo sapiens
NTMATKRB
VYMATKAN		 SELEX
Yin et al.(2017)
HOXA5_FL_HT-SELEX 		0.112 1.000
HOXB5
M05051_2.00 		Homo sapiens
NTAATKRV
BYMATTAN		 SELEX
Yin et al.(2017)
HOXB5_eDBD_HT-SELEX 		0.112 1.000
HOXB5
M05054_2.00 		Homo sapiens
STMATKAB
VTMATKAS		 SELEX
Yin et al.(2017)
HOXB5_FL_HT-SELEX 		0.112 1.000
HOXA5
M10652_2.00 		Homo sapiens
NGRDBKBDHNBAVTAATKRRGRDVDDDGSR
YSCHHHBHYCYYMATTABTVNDHVMVHYCN		 Transfac
Matys et al.(2006)
V$HOX13_01 		0.112 1.000
HOXA5
M08457_2.00 		Homo sapiens
CDBWAATK
MATTWVHG		 COMPILED
Mathelier et al.(2014)
MA0158.1 		0.112 1.000
HOXA5
M04969_2.00 		Homo sapiens
BTAATKRV
BYMATTAV		 SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_1 		0.112 1.000
HOXA5
M04970_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA5_eDBD_Methyl-HT-SELEX_2 		0.112 1.000
HOXA5
M04972_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_1 		0.112 1.000
HOXA5
M04973_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXA5_FL_Methyl-HT-SELEX_2 		0.112 1.000
HOXB5
M05052_2.00 		Homo sapiens
NTMATKRN
NYMATKAN		 SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_1 		0.112 1.000
HOXB5
M05053_2.00 		Homo sapiens
NTAAYGAY
RTCRTTAN		 SELEX
Yin et al.(2017)
HOXB5_eDBD_Methyl-HT-SELEX_2 		0.112 1.000
HOXB5
M05055_2.00 		Homo sapiens
NTMATKAB
VTMATKAN		 SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_1 		0.112 1.000
HOXB5
M05056_2.00 		Homo sapiens
HTAAYGAY
RTCRTTAD		 SELEX
Yin et al.(2017)
HOXB5_FL_Methyl-HT-SELEX_2 		0.112 1.000
For this family, TFs with SR scores > 0.599 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Brh_R000003 Homeodomain 1 37

Links

Other Homeodomain family TFs
Other Buceros rhinoceros TFs

86 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
hoxa4.S Xenopus laevis XB-GENE-865635 N 0.780
hoxb2.S Xenopus laevis XB-GENE-478530 I 0.775
AAA85027 Xenopus laevis AAA85027 I 0.769
hoxa10.L Xenopus laevis XB-GENE-6486002 I 0.769
AAA85030 Xenopus laevis AAA85030 N 0.765
ENSPMAG00000010256 Petromyzon marinus ENSPMAG00000010256 N 0.746
ENSETEG00000007628 Echinops telfairi ENSETEG00000007628 I 0.736
ENSMMUG00000030441 Macaca mulatta ENSMMUG00000030441 I 0.736
ENSMMUG00000032301 Macaca mulatta ENSMMUG00000032301 I 0.736
ENSPMAG00000009999 Petromyzon marinus ENSPMAG00000009999 N 0.731
ENSPPYG00000005435 Pongo abelii ENSPPYG00000005435 N 0.713
PHOX2A Homo sapiens ENSG00000165462 D 0.713
ENSTRUG00000017521 Takifugu rubripes ENSTRUG00000017521 I 0.706
SROB_0000391301 Schistosoma rodhaini SROB_0000391301 N 0.702
GLRG_06242 Colletotrichum graminicola GLRG_06242 N 0.701
HPBE_0002557401 Heligmosomoides bakeri HPBE_0002557401 N 0.688
Minc08600 Meloidogyne incognita Minc08600 N 0.685
NBR_0001551701 Nippostrongylus brasiliensis NBR_0001551701 N 0.684
ECPE_0000380901 Echinostoma caproni ECPE_0000380901 N 0.684
EFV59239 Trichinella spiralis EFV59239 N 0.684
SCUD_0000812001 Schistosoma curassoni SCUD_0000812001 N 0.684
PEQ_0000908401 Parascaris equorum PEQ_0000908401 N 0.683
LotgiG178004 Lottia gigantea LotgiG178004 N 0.681
D917_09995 Trichinella nativa D917_09995 I 0.676
SROB_0000951501 Schistosoma rodhaini SROB_0000951501 N 0.676
MEIS3 Callithrix jacchus ENSCJAG00000011475 I 0.676
LLOJ003025 Lutzomyia longipalpis LLOJ003025 N 0.672
Cmyd_10012611 Chelonia mydas Cmyd_10012611 N 0.672
SNAPOd2T00000484001 Oikopleura dioica SNAPOd2T00000484001 N 0.671
MVLG_07150 Microbotryum violaceum MVLG_07150 N 0.669
MCINX000790 Melitaea cinxia MCINX000790 N 0.668
ASIS021566 Anopheles sinensis ASIS021566 N 0.668
EMIHUDRAFT_241459 Emiliania huxleyi EMIHUDRAFT_241459 N 0.668
L898_g2802 Steinernema monticolum L898_g2802 N 0.667
CMU_000020 Cryptosporidium muris CMU_000020 N 0.665
ANCDUO_21488 Ancylostoma duodenale ANCDUO_21488 N 0.665
ANCDUO_21460 Ancylostoma duodenale ANCDUO_21460 N 0.665
SCLCIDRAFT_1207514 Scleroderma citrinum SCLCIDRAFT_1207514 N 0.663
SMTD_0001546801 Schistosoma mattheei SMTD_0001546801 N 0.662
MCINX013555 Melitaea cinxia MCINX013555 N 0.657
L893_g22533 Steinernema glaseri L893_g22533 N 0.657
lhx5.S Xenopus laevis XB-GENE-865965 I 0.656
CAA77673 Xenopus laevis CAA77673 I 0.656
fgeneshTM_pg.13_#_82 Tremella mesenterica fgeneshTM_pg.13_#_82 N 0.655
CTTNBP2NL Monodelphis domestica ENSMODG00000001211 N 0.654
ENSSHAG00000016995 Sarcophilus harrisii ENSSHAG00000016995 N 0.654
ISCW021207 Ixodes scapularis ISCW021207 N 0.651
BGLB008237 Biomphalaria glabrata BGLB008237 N 0.649
ENSXMAG00000019975 Xiphophorus maculatus ENSXMAG00000019975 N 0.649
lhx3.L Xenopus laevis XB-GENE-865930 I 0.647
CPIJ015450 Culex quinquefasciatus CPIJ015450 N 0.646
GPLIN_001034800 Globodera pallida GPLIN_001034800 N 0.646
ACUA018278 Anopheles culicifacies ACUA018278 N 0.646
CpipJ_CPIJ015450 Culex pipiens CpipJ_CPIJ015450 N 0.646
PEQ_0001057801 Parascaris equorum PEQ_0001057801 N 0.645
LCUP014212 Lucilia cuprina LCUP014212 N 0.645
ENSAPLG00000006966 Anas platyrhynchos ENSAPLG00000006966 N 0.644
ACAC_0000073601 Angiostrongylus cantonensis ACAC_0000073601 N 0.644
L798_12976 Zootermopsis nevadensis L798_12976 N 0.640
SVUK_0000323501 Strongylus vulgaris SVUK_0000323501 N 0.640
OBART08G15250 Oryza barthii OBART08G15250 N 0.638
ORGLA08G0133100 Oryza glaberrima ORGLA08G0133100 N 0.638
Gorai.003G023300 Gossypium raimondii Gorai.003G023300 N 0.638
ENSCSAVG00000002570 Ciona savignyi ENSCSAVG00000002570 N 0.637
A_07772 Schistosoma haematobium A_07772 N 0.636
PEQ_0000480201 Parascaris equorum PEQ_0000480201 N 0.633
orange1.1g005863m.g Citrus sinensis orange1.1g005863m.g I 0.633
MTR_3g112300 Medicago truncatula MTR_3g112300 I 0.633
L889_g12823 Steinernema feltiae L889_g12823 N 0.632
nRc.2.0.1.g13634 Romanomermis culicivorax nRc.2.0.1.g13634 N 0.629
nDi.2.2.2.g12219 Dirofilaria immitis nDi.2.2.2.g12219 N 0.629
SINV18611 Solenopsis invicta SINV18611 N 0.629
ACEP17701 Atta cephalotes ACEP17701 N 0.629
SVUK_0001098001 Strongylus vulgaris SVUK_0001098001 N 0.629
L892_g23489 Steinernema scapterisci L892_g23489 N 0.625
CJA33058 Caenorhabditis japonica CJA33058 N 0.622
CJA41362 Caenorhabditis japonica CJA41362 N 0.622
TVAG_170510 Trichomonas vaginalis TVAG_170510 N 0.620
MTR_6g007613 Medicago truncatula MTR_6g007613 N 0.618
DILT_0001433701 Diphyllobothrium latum DILT_0001433701 N 0.617
PEQ_0001303101 Parascaris equorum PEQ_0001303101 N 0.615
CGI_10009567 Crassostrea gigas CGI_10009567 N 0.613
Carubv10013054m.g Capsella rubella Carubv10013054m.g N 0.606
EVEC_0001028401 Enterobius vermicularis EVEC_0001028401 N 0.606
ENSONIG00000004596 Oreochromis niloticus ENSONIG00000004596 I 0.112
ENSPFOG00000002599 Poecilia formosa ENSPFOG00000002599 I 0.112