Carubv10013054m.g (Capsella rubella)
Homeodomain

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00046 (Homeobox) IPR001356 Carubv10013054m.g T228311_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10013054m Homeodomain 625 674
Carubv10013144m Homeodomain 625 666
Carubv10013245m Homeodomain 572 613

Links

Other Homeodomain family TFs
Other Capsella rubella TFs

75 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.1211s0004 Capsella grandiflora Cagra.1211s0004 N 0.865
CJA41362 Caenorhabditis japonica CJA41362 N 0.671
nDi.2.2.2.g12219 Dirofilaria immitis nDi.2.2.2.g12219 N 0.655
NBR_0001551701 Nippostrongylus brasiliensis NBR_0001551701 N 0.652
EFV59239 Trichinella spiralis EFV59239 N 0.651
CTTNBP2NL Monodelphis domestica ENSMODG00000001211 N 0.648
ENSSHAG00000016995 Sarcophilus harrisii ENSSHAG00000016995 N 0.648
orange1.1g005863m.g Citrus sinensis orange1.1g005863m.g I 0.646
SINV18611 Solenopsis invicta SINV18611 N 0.643
ACUA018278 Anopheles culicifacies ACUA018278 N 0.643
Minc08600 Meloidogyne incognita Minc08600 N 0.643
D917_09995 Trichinella nativa D917_09995 I 0.643
MEIS3 Callithrix jacchus ENSCJAG00000011475 I 0.643
SROB_0000951501 Schistosoma rodhaini SROB_0000951501 N 0.643
PEQ_0000908401 Parascaris equorum PEQ_0000908401 N 0.641
CMU_000020 Cryptosporidium muris CMU_000020 N 0.636
TVAG_170510 Trichomonas vaginalis TVAG_170510 N 0.633
ENSAPLG00000006966 Anas platyrhynchos ENSAPLG00000006966 N 0.631
SCLCIDRAFT_1207514 Scleroderma citrinum SCLCIDRAFT_1207514 N 0.631
BGLB008237 Biomphalaria glabrata BGLB008237 N 0.631
MCINX000790 Melitaea cinxia MCINX000790 N 0.628
SMTD_0001546801 Schistosoma mattheei SMTD_0001546801 N 0.628
ENSPPYG00000005435 Pongo abelii ENSPPYG00000005435 N 0.627
A_07772 Schistosoma haematobium A_07772 N 0.626
CpipJ_CPIJ015450 Culex pipiens CpipJ_CPIJ015450 N 0.625
ACEP17701 Atta cephalotes ACEP17701 N 0.625
CPIJ015450 Culex quinquefasciatus CPIJ015450 N 0.625
ACAC_0000073601 Angiostrongylus cantonensis ACAC_0000073601 N 0.624
ASIS021566 Anopheles sinensis ASIS021566 N 0.623
L893_g22533 Steinernema glaseri L893_g22533 N 0.622
SCUD_0000812001 Schistosoma curassoni SCUD_0000812001 N 0.622
Cmyd_10012611 Chelonia mydas Cmyd_10012611 N 0.621
CJA33058 Caenorhabditis japonica CJA33058 N 0.620
PEQ_0000480201 Parascaris equorum PEQ_0000480201 N 0.619
LotgiG178004 Lottia gigantea LotgiG178004 N 0.618
LLOJ003025 Lutzomyia longipalpis LLOJ003025 N 0.616
DILT_0001433701 Diphyllobothrium latum DILT_0001433701 N 0.613
MTR_3g112300 Medicago truncatula MTR_3g112300 I 0.613
MTR_6g007613 Medicago truncatula MTR_6g007613 N 0.612
HPBE_0002557401 Heligmosomoides bakeri HPBE_0002557401 N 0.612
Gorai.003G023300 Gossypium raimondii Gorai.003G023300 N 0.612
ENSETEG00000007628 Echinops telfairi ENSETEG00000007628 I 0.611
ENSMMUG00000030441 Macaca mulatta ENSMMUG00000030441 I 0.611
ENSMMUG00000032301 Macaca mulatta ENSMMUG00000032301 I 0.611
GLRG_06242 Colletotrichum graminicola GLRG_06242 N 0.611
ENSXMAG00000019975 Xiphophorus maculatus ENSXMAG00000019975 N 0.610
lhx5.S Xenopus laevis XB-GENE-865965 I 0.610
CAA77673 Xenopus laevis CAA77673 I 0.610
GPLIN_001034800 Globodera pallida GPLIN_001034800 N 0.610
nRc.2.0.1.g13634 Romanomermis culicivorax nRc.2.0.1.g13634 N 0.609
PEQ_0001057801 Parascaris equorum PEQ_0001057801 N 0.609
SNAPOd2T00000484001 Oikopleura dioica SNAPOd2T00000484001 N 0.609
ANCDUO_21488 Ancylostoma duodenale ANCDUO_21488 N 0.609
PHOX2A Homo sapiens ENSG00000165462 D 0.609
ANCDUO_21460 Ancylostoma duodenale ANCDUO_21460 N 0.609
MVLG_07150 Microbotryum violaceum MVLG_07150 N 0.608
SVUK_0000323501 Strongylus vulgaris SVUK_0000323501 N 0.607
fgeneshTM_pg.13_#_82 Tremella mesenterica fgeneshTM_pg.13_#_82 N 0.606
Brh_R000003 Buceros rhinoceros Brh_R000003 I 0.606
ENSTRUG00000017521 Takifugu rubripes ENSTRUG00000017521 I 0.606
MCINX013555 Melitaea cinxia MCINX013555 N 0.605
SVUK_0001098001 Strongylus vulgaris SVUK_0001098001 N 0.605
EMIHUDRAFT_241459 Emiliania huxleyi EMIHUDRAFT_241459 N 0.605
L798_12976 Zootermopsis nevadensis L798_12976 N 0.605
LCUP014212 Lucilia cuprina LCUP014212 N 0.605
ECPE_0000380901 Echinostoma caproni ECPE_0000380901 N 0.604
SROB_0000391301 Schistosoma rodhaini SROB_0000391301 N 0.604
OBART08G15250 Oryza barthii OBART08G15250 N 0.601
lhx3.L Xenopus laevis XB-GENE-865930 I 0.601
ORGLA08G0133100 Oryza glaberrima ORGLA08G0133100 N 0.601
CGI_10009567 Crassostrea gigas CGI_10009567 N 0.601
PEQ_0001303101 Parascaris equorum PEQ_0001303101 N 0.600
ENSPMAG00000009999 Petromyzon marinus ENSPMAG00000009999 N 0.600
ENSCSAVG00000002570 Ciona savignyi ENSCSAVG00000002570 N 0.600