Cla006731 (Citrullus lanatus)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Cla006731 T246335_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.745 0.745
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.745 0.745
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla006731 LOB 1 55

Links

Other LOB family TFs
Other Citrullus lanatus TFs

33 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.800
PK03716.1 Cannabis sativa PK03716.1 I 0.765
Bra016992 Brassica rapa Bra016992 I 0.764
Pm019028 Prunus mume Pm019028 I 0.764
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.764
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.764
MDP0000278334 Malus domestica MDP0000278334 I 0.764
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.745
LBD15 Arabidopsis thaliana AT2G40470 I 0.745
Bo4g190210 Brassica oleracea Bo4g190210 I 0.745
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.745
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.745
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.745
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.745
mgf020556m Mimulus guttatus mgf020556m I 0.745
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.745
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.745
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.745
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.745
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.745
Bo4g012620 Brassica oleracea Bo4g012620 I 0.727
Bra004572 Brassica rapa Bra004572 I 0.727
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.727
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.727
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.709
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.709
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.709
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.709
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.709
29957.m001411 Ricinus communis 29957.m001411 I 0.709
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.709
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.709
PK17019.1 Cannabis sativa PK17019.1 I 0.706