CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
LjSGA_040320.1
(
Lotus japonicus
)
LOB
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF03195 (DUF260)
IPR004883
LjSGA_040320.1
T247443_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
LBD13
M06956_2.00
Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR
Dap-seq
OMalley et al.(2016)
LBD13_col_a
0.765
0.765
LBD13
M06957_2.00
Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG
Dap-seq
OMalley et al.(2016)
LBD13_colamp_a
0.765
0.765
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
LjSGA_040320.1
LOB
1
51
VPEGQRADAANSMVYEANLRLRDPVYGCMGAISALQQQVQSLQAELHAVRA
Links
Other
LOB
family TFs
Other
Lotus japonicus
TFs
103 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
MTR_5g075020
Medicago truncatula
MTR_5g075020
I
0.961
cassava15554.m1
Manihot esculenta
cassava15554.m1
I
0.922
LBD15
Vitis vinifera
VIT_13s0067g02380
I
0.922
TCM_045438
Theobroma cacao
TCM_045438
I
0.922
AMTR_s00007p00227160
Amborella trichopoda
AMTR_s00007p00227160
I
0.922
Gorai.009G295000
Gossypium raimondii
Gorai.009G295000
I
0.922
GLYMA14G38280
Glycine max
GLYMA14G38280
I
0.922
evm.TU.supercontig_19.92
Carica papaya
evm.TU.supercontig_19.92
I
0.902
Bo4g012620
Brassica oleracea
Bo4g012620
I
0.902
Pm019028
Prunus mume
Pm019028
I
0.902
Bra004572
Brassica rapa
Bra004572
I
0.902
PRUPE_ppa011757mg
Prunus persica
PRUPE_ppa011757mg
I
0.902
GSMUA_Achr11G08330_001
Musa acuminata
GSMUA_Achr11G08330_001
I
0.902
Bostr.23794s0013
Boechera stricta
Bostr.23794s0013
I
0.882
LBD15
Arabidopsis lyrata
fgenesh2_kg.4__2164__AT2G40470.1
I
0.882
Aquca_005_00169
Aquilegia coerulea
Aquca_005_00169
I
0.882
Carubv10024002m.g
Capsella rubella
Carubv10024002m.g
I
0.882
GLYMA02G40080
Glycine max
GLYMA02G40080
I
0.882
Gorai.013G005900
Gossypium raimondii
Gorai.013G005900
I
0.882
MDP0000278334
Malus domestica
MDP0000278334
I
0.882
LBD15
Arabidopsis thaliana
AT2G40470
I
0.882
Cagra.1642s0010
Capsella grandiflora
Cagra.1642s0010
I
0.882
POPTR_0013s08040
Populus trichocarpa
POPTR_0013s08040
I
0.863
chr1.CM0125.30.nd
Lotus japonicus
chr1.CM0125.30.nd
I
0.863
Bo3g034980
Brassica oleracea
Bo3g034980
I
0.863
Thhalv10017905m.g
Eutrema salsugineum
Thhalv10017905m.g
I
0.863
GSMUA_Achr7G22200_001
Musa acuminata
GSMUA_Achr7G22200_001
I
0.863
Bra000188
Brassica rapa
Bra000188
I
0.863
gene28137-v1.0-hybrid
Fragaria vesca
gene28137-v1.0-hybrid
I
0.863
Bo4g190210
Brassica oleracea
Bo4g190210
I
0.863
Lus10009930.g
Linum usitatissimum
Lus10009930.g
I
0.863
PK03716.1
Cannabis sativa
PK03716.1
I
0.853
chr2.CM1032.110.nc
Lotus japonicus
chr2.CM1032.110.nc
I
0.843
Ciclev10032684m.g
Citrus clementina
Ciclev10032684m.g
I
0.843
29957.m001411
Ricinus communis
29957.m001411
I
0.843
Cucsa.144080
Cucumis sativus
Cucsa.144080
I
0.843
Cla007391
Citrullus lanatus
Cla007391
I
0.843
Bra016992
Brassica rapa
Bra016992
I
0.843
orange1.1g027307m.g
Citrus sinensis
orange1.1g027307m.g
I
0.843
Pavir.Ea03276
Panicum virgatum
Pavir.Ea03276
I
0.824
PGSC0003DMG400020562
Solanum tuberosum
PGSC0003DMG400020562
I
0.824
PGSC0003DMG400029080
Solanum tuberosum
PGSC0003DMG400029080
I
0.824
TRIUR3_34193
Triticum urartu
TRIUR3_34193
I
0.824
ORUFI05G04770
Oryza rufipogon
ORUFI05G04770
I
0.824
Solyc06g050430.2
Solanum lycopersicum
Solyc06g050430.2
I
0.824
Si012018m.g
Setaria italica
Si012018m.g
I
0.824
Si004575m.g
Setaria italica
Si004575m.g
I
0.824
Sb03g038410
Sorghum bicolor
Sb03g038410
I
0.824
OS05G0165450
Oryza sativa
OS05G0165450
I
0.824
F775_25790
Aegilops tauschii
F775_25790
I
0.824
MTR_5g083960
Medicago truncatula
MTR_5g083960
I
0.824
OGLUM05G04450
Oryza glumaepatula
OGLUM05G04450
I
0.824
OBART05G04570
Oryza barthii
OBART05G04570
I
0.824
MTR_3g094690
Medicago truncatula
MTR_3g094690
I
0.824
OMERI05G04500
Oryza meridionalis
OMERI05G04500
I
0.824
BRADI2G53690
Brachypodium distachyon
BRADI2G53690
I
0.824
ORGLA05G0042200
Oryza glaberrima
ORGLA05G0042200
I
0.824
BGIOSGA018747
Oryza indica
BGIOSGA018747
I
0.824
ONIVA05G04920
Oryza nivara
ONIVA05G04920
I
0.824
Bo4g190140
Brassica oleracea
Bo4g190140
I
0.816
LPERR01G30700
Leersia perrieri
LPERR01G30700
I
0.804
ORUFI01G39050
Oryza rufipogon
ORUFI01G39050
I
0.804
GSMUA_AchrUn_randomG14060_001
Musa acuminata
GSMUA_AchrUn_randomG14060_001
I
0.804
MLOC_56075
Hordeum vulgare
MLOC_56075
I
0.804
BGIOSGA004719
Oryza indica
BGIOSGA004719
I
0.804
GSMUA_Achr5G07460_001
Musa acuminata
GSMUA_Achr5G07460_001
I
0.804
Pavir.Eb03580
Panicum virgatum
Pavir.Eb03580
I
0.804
Pavir.J00291
Panicum virgatum
Pavir.J00291
I
0.804
F775_52636
Aegilops tauschii
F775_52636
I
0.804
GRMZM2G092517
Zea mays
GRMZM2G092517
I
0.804
Pavir.Ca01098
Panicum virgatum
Pavir.Ca01098
I
0.804
cassava31953.m1
Manihot esculenta
cassava31953.m1
I
0.804
PGSC0003DMG400030461
Solanum tuberosum
PGSC0003DMG400030461
I
0.804
OGLUM01G39690
Oryza glumaepatula
OGLUM01G39690
I
0.804
OMERI01G32750
Oryza meridionalis
OMERI01G32750
I
0.804
ORGLA01G0294900
Oryza glaberrima
ORGLA01G0294900
I
0.804
ONIVA01G40640
Oryza nivara
ONIVA01G40640
I
0.804
Sb09g004940
Sorghum bicolor
Sb09g004940
I
0.804
OS01G0825000
Oryza sativa
OS01G0825000
I
0.804
OLONG_000658
Oryza longistaminata
OLONG_000658
I
0.804
Traes_1DS_BB8508CC6
Triticum aestivum
Traes_1DS_BB8508CC6
I
0.804
Traes_1AS_43FB6A3CF
Triticum aestivum
Traes_1AS_43FB6A3CF
I
0.804
Traes_1BS_8F922CA93
Triticum aestivum
Traes_1BS_8F922CA93
I
0.804
OBART01G35680
Oryza barthii
OBART01G35680
I
0.804
Bra021627
Brassica rapa
Bra021627
I
0.784
OPUNC01G34540
Oryza punctata
OPUNC01G34540
I
0.784
Bo4g172950
Brassica oleracea
Bo4g172950
I
0.784
LPERR05G04040
Leersia perrieri
LPERR05G04040
I
0.784
mgf020556m
Mimulus guttatus
mgf020556m
I
0.784
LBD13
Arabidopsis lyrata
fgenesh2_kg.4__1005__AT2G30340.1
I
0.784
Bo4g059520
Brassica oleracea
Bo4g059520
I
0.765
Thhalv10017073m.g
Eutrema salsugineum
Thhalv10017073m.g
I
0.765
LBD13
Arabidopsis thaliana
AT2G30340
D
0.765
BRADI2G34520
Brachypodium distachyon
BRADI2G34520
I
0.765
Bra018320
Brassica rapa
Bra018320
I
0.765
Bostr.24513s0205
Boechera stricta
Bostr.24513s0205
I
0.765
MLOC_16076
Hordeum vulgare
MLOC_16076
I
0.764
Cla006731
Citrullus lanatus
Cla006731
I
0.745
PDK_20s1537041g001
Phoenix dactylifera
PDK_20s1537041g001
N
0.729
SELMODRAFT_48883
Selaginella moellendorffii
SELMODRAFT_48883
I
0.725
SELMODRAFT_58936
Selaginella moellendorffii
SELMODRAFT_58936
I
0.725
PDK_20s1448121g001
Phoenix dactylifera
PDK_20s1448121g001
N
0.712
PDK_20s1387061g002
Phoenix dactylifera
PDK_20s1387061g002
I
0.706