Bo4g172950 (Brassica oleracea)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03195 (DUF260) IPR004883 Bo4g172950 T244988_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.990 0.990
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.990 0.990
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo4g172950.1 LOB 53 151

Links

Other LOB family TFs
Other Brassica oleracea TFs

142 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bra021627 Brassica rapa Bra021627 I 1.000
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 1.000
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.990
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.990
Bo4g059520 Brassica oleracea Bo4g059520 I 0.990
Bra018320 Brassica rapa Bra018320 I 0.990
LBD13 Arabidopsis thaliana AT2G30340 D 0.990
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.980
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.970
PK21617.1 Cannabis sativa PK21617.1 I 0.957
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.919
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.919
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.904
mgf011471m Mimulus guttatus mgf011471m I 0.889
OB05G14280 Oryza brachyantha OB05G14280 I 0.885
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.879
Bo3g034980 Brassica oleracea Bo3g034980 I 0.879
Bra000188 Brassica rapa Bra000188 I 0.879
Bra016992 Brassica rapa Bra016992 I 0.879
29957.m001411 Ricinus communis 29957.m001411 I 0.879
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.869
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.869
mgf020556m Mimulus guttatus mgf020556m I 0.869
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.869
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.869
Cla007391 Citrullus lanatus Cla007391 I 0.869
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.869
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.869
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.869
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.869
LBD15 Arabidopsis thaliana AT2G40470 I 0.869
Bo4g190210 Brassica oleracea Bo4g190210 I 0.869
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.859
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.859
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.859
PK17217.1 Cannabis sativa PK17217.1 I 0.859
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.859
Pm000277 Prunus mume Pm000277 I 0.859
TCM_045438 Theobroma cacao TCM_045438 I 0.859
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.859
TCM_042262 Theobroma cacao TCM_042262 I 0.859
Ca_15642 Cicer arietinum Ca_15642 I 0.859
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.859
29729.m002335 Ricinus communis 29729.m002335 I 0.859
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.859
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.859
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.859
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.859
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.859
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.859
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.848
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.848
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.848
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.848
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.848
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.848
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.848
Ca_04126 Cicer arietinum Ca_04126 I 0.848
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.848
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.848
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.848
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.848
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.848
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.848
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.848
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.848
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.848
OBART05G04570 Oryza barthii OBART05G04570 I 0.848
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.848
OS05G0165450 Oryza sativa OS05G0165450 I 0.848
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.848
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.848
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.838
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.838
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.838
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.838
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.838
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.838
Si012018m.g Setaria italica Si012018m.g I 0.838
Bra004572 Brassica rapa Bra004572 I 0.838
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.838
Bo4g012620 Brassica oleracea Bo4g012620 I 0.838
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.828
OBART01G35680 Oryza barthii OBART01G35680 I 0.828
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.828
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.828
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.828
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.828
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.828
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.828
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.828
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.828
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.828
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.828
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.828
F775_52636 Aegilops tauschii F775_52636 I 0.828
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.828
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
MDP0000278334 Malus domestica MDP0000278334 I 0.828
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.828
OB01G44400 Oryza brachyantha OB01G44400 I 0.828
OS01G0825000 Oryza sativa OS01G0825000 I 0.828
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.828
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.828
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.828
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.828
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.828
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.828
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.828
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.828
F775_25790 Aegilops tauschii F775_25790 I 0.818
Ca_12420 Cicer arietinum Ca_12420 I 0.818
Si004575m.g Setaria italica Si004575m.g I 0.818
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.818
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.818
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.818
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.818
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.818
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.818
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.818
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.818
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.818
Bo4g190140 Brassica oleracea Bo4g190140 I 0.816
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.808
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.808
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.808
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.808
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.808
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.808
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.808
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.808
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.798
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.798
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.798
PK03716.1 Cannabis sativa PK03716.1 I 0.794
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.788
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.788
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.788
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.784
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.778
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.758
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.707