Pavir.J00291 (Panicum virgatum)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pavir.J00291 T247218_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.838 0.838
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.838 0.838
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.J00291.1.p LOB 58 156
Pavir.J00291.2.p LOB 33 131

Links

Other LOB family TFs
Other Panicum virgatum TFs

155 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Sb09g004940 Sorghum bicolor Sb09g004940 I 1.000
Si012018m.g Setaria italica Si012018m.g I 0.990
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.990
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.990
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.960
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.960
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.960
OS05G0165450 Oryza sativa OS05G0165450 I 0.960
OBART05G04570 Oryza barthii OBART05G04570 I 0.960
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.960
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.960
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.960
OB05G14280 Oryza brachyantha OB05G14280 I 0.954
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.939
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.939
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.939
F775_52636 Aegilops tauschii F775_52636 I 0.939
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.939
PK21617.1 Cannabis sativa PK21617.1 I 0.935
TRIUR3_18328 Triticum urartu TRIUR3_18328 I 0.932
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.929
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.919
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.889
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.889
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.889
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.879
OBART01G35680 Oryza barthii OBART01G35680 I 0.879
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.879
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.879
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.879
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.879
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.879
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.879
Si004575m.g Setaria italica Si004575m.g I 0.879
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.879
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.879
TCM_042262 Theobroma cacao TCM_042262 I 0.879
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.879
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.879
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.879
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.879
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.879
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.879
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.879
LBD15 Arabidopsis thaliana AT2G40470 I 0.879
OS01G0825000 Oryza sativa OS01G0825000 I 0.879
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.869
PK17217.1 Cannabis sativa PK17217.1 I 0.869
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.869
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.869
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.869
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.869
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.869
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.869
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.869
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.869
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.869
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.869
TCM_045438 Theobroma cacao TCM_045438 I 0.869
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.869
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.869
Bra000188 Brassica rapa Bra000188 I 0.869
OB01G44400 Oryza brachyantha OB01G44400 I 0.869
F775_25790 Aegilops tauschii F775_25790 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.869
Bo3g034980 Brassica oleracea Bo3g034980 I 0.869
Ca_04126 Cicer arietinum Ca_04126 I 0.859
Bo4g190210 Brassica oleracea Bo4g190210 I 0.859
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.859
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.859
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.859
Bra004572 Brassica rapa Bra004572 I 0.859
mgf020556m Mimulus guttatus mgf020556m I 0.859
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.859
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.859
29729.m002335 Ricinus communis 29729.m002335 I 0.859
Cla007391 Citrullus lanatus Cla007391 I 0.859
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.859
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.859
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.859
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.859
Bo4g012620 Brassica oleracea Bo4g012620 I 0.859
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.859
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.848
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.848
Bra016992 Brassica rapa Bra016992 I 0.848
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.848
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.848
mgf011471m Mimulus guttatus mgf011471m I 0.848
29957.m001411 Ricinus communis 29957.m001411 I 0.848
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.848
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.848
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.848
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.848
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.848
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.848
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.848
MDP0000167580 Malus domestica MDP0000167580 I 0.840
LBD13 Arabidopsis thaliana AT2G30340 D 0.838
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.838
Bo4g059520 Brassica oleracea Bo4g059520 I 0.838
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.838
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.838
Bra018320 Brassica rapa Bra018320 I 0.838
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.838
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.838
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.838
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.838
Bo4g172950 Brassica oleracea Bo4g172950 I 0.828
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.828
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.828
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.828
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.828
MDP0000278334 Malus domestica MDP0000278334 I 0.828
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.828
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.828
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.828
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.828
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.828
Bra021627 Brassica rapa Bra021627 I 0.828
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.828
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.818
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.818
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.818
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.818
Ca_15642 Cicer arietinum Ca_15642 I 0.818
Pm000277 Prunus mume Pm000277 I 0.818
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.818
Ca_12420 Cicer arietinum Ca_12420 I 0.818
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.818
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.818
evm.TU.supercontig_331.6 Carica papaya evm.TU.supercontig_331.6 I 0.809
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.808
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.808
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.804
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.788
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.778
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.778
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.763
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.758
Bo4g190140 Brassica oleracea Bo4g190140 I 0.737
PK03716.1 Cannabis sativa PK03716.1 I 0.735
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
PK29334.1 Cannabis sativa PK29334.1 I 0.719
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.707
mgf026046m Mimulus guttatus mgf026046m I 0.707
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.707
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.707
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.707
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.707
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.707
Si037583m.g Setaria italica Si037583m.g I 0.707