PK17217.1 (Cannabis sativa)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 PK17217.1 T247388_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.848 0.848
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.848 0.848
LBD4
M02261_2.00 		Arabidopsis thaliana
VDNVCGSNNN
NNNSCGBNHB		 PBM
Weirauch et al.(2014)
pTH7515 		0.707 0.707
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
PK17217.1 LOB 63 161

Links

Other LOB family TFs
Other Cannabis sativa TFs

239 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00007p00227160 Amborella trichopoda AMTR_s00007p00227160 I 0.990
LBD15 Vitis vinifera VIT_13s0067g02380 I 0.980
cassava15554.m1 Manihot esculenta cassava15554.m1 I 0.980
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.980
Gorai.009G295000 Gossypium raimondii Gorai.009G295000 I 0.980
cassava20848.m1 Manihot esculenta cassava20848.m1 I 0.980
TCM_045438 Theobroma cacao TCM_045438 I 0.980
PRUPE_ppa011757mg Prunus persica PRUPE_ppa011757mg I 0.970
GLYMA04G39830 Glycine max GLYMA04G39830 I 0.970
GLYMA06G15050 Glycine max GLYMA06G15050 I 0.970
gene21311-v1.0-hybrid Fragaria vesca gene21311-v1.0-hybrid I 0.960
Cucsa.144080 Cucumis sativus Cucsa.144080 I 0.960
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.960
LBD15 Arabidopsis thaliana AT2G40470 I 0.960
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.960
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.960
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.960
Eucgr.G03121 Eucalyptus grandis Eucgr.G03121 I 0.960
Cla007391 Citrullus lanatus Cla007391 I 0.960
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.960
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.960
29729.m002335 Ricinus communis 29729.m002335 I 0.960
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.960
Ca_04126 Cicer arietinum Ca_04126 I 0.960
Bo4g190210 Brassica oleracea Bo4g190210 I 0.960
Bra000188 Brassica rapa Bra000188 I 0.949
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.949
Thhalv10017905m.g Eutrema salsugineum Thhalv10017905m.g I 0.949
MDP0000278334 Malus domestica MDP0000278334 I 0.949
Bo3g034980 Brassica oleracea Bo3g034980 I 0.949
Gorai.012G015900 Gossypium raimondii Gorai.012G015900 I 0.949
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.939
Bra004572 Brassica rapa Bra004572 I 0.939
Bo4g012620 Brassica oleracea Bo4g012620 I 0.939
GLYMA14G38280 Glycine max GLYMA14G38280 I 0.929
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.929
Bra016992 Brassica rapa Bra016992 I 0.929
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.929
MTR_3g094690 Medicago truncatula MTR_3g094690 I 0.929
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.919
MTR_5g083960 Medicago truncatula MTR_5g083960 I 0.919
Ca_12420 Cicer arietinum Ca_12420 I 0.919
mgf011471m Mimulus guttatus mgf011471m I 0.919
orange1.1g027307m.g Citrus sinensis orange1.1g027307m.g I 0.919
evm.TU.supercontig_2.327 Carica papaya evm.TU.supercontig_2.327 I 0.919
Ciclev10032684m.g Citrus clementina Ciclev10032684m.g I 0.919
Lus10024183.g Linum usitatissimum Lus10024183.g I 0.909
GLYMA02G40080 Glycine max GLYMA02G40080 I 0.909
gene28137-v1.0-hybrid Fragaria vesca gene28137-v1.0-hybrid I 0.909
Lus10009930.g Linum usitatissimum Lus10009930.g I 0.909
Gorai.003G151800 Gossypium raimondii Gorai.003G151800 I 0.909
TCM_042262 Theobroma cacao TCM_042262 I 0.909
gw1.9.232.1 Physcomitrella patens gw1.9.232.1 I 0.899
gw1.156.75.1 Physcomitrella patens gw1.156.75.1 I 0.899
Solyc06g007390.2 Solanum lycopersicum Solyc06g007390.2 I 0.899
LBD13 Vitis vinifera VIT_06s0004g07790 I 0.889
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.889
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.889
GSMUA_Achr5G07460_001 Musa acuminata GSMUA_Achr5G07460_001 I 0.889
OS05G0165450 Oryza sativa OS05G0165450 I 0.889
Solyc06g082430.1 Solanum lycopersicum Solyc06g082430.1 I 0.889
PGSC0003DMG400020562 Solanum tuberosum PGSC0003DMG400020562 I 0.889
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.889
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.889
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.889
OBART05G04570 Oryza barthii OBART05G04570 I 0.889
Cucsa.326100 Cucumis sativus Cucsa.326100 I 0.889
mgf020556m Mimulus guttatus mgf020556m I 0.889
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.889
29957.m001411 Ricinus communis 29957.m001411 I 0.889
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.889
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.889
SapurV1A.0215s0070 Salix purpurea SapurV1A.0215s0070 I 0.879
Ca_15642 Cicer arietinum Ca_15642 I 0.879
Si012018m.g Setaria italica Si012018m.g I 0.879
PGSC0003DMG400030461 Solanum tuberosum PGSC0003DMG400030461 I 0.879
POPTR_0019s14790 Populus trichocarpa POPTR_0019s14790 I 0.879
PRUPE_ppa019397mg Prunus persica PRUPE_ppa019397mg I 0.879
Eucgr.B04019 Eucalyptus grandis Eucgr.B04019 I 0.879
Si004575m.g Setaria italica Si004575m.g I 0.869
SapurV1A.0222s0070 Salix purpurea SapurV1A.0222s0070 I 0.869
Sb09g004940 Sorghum bicolor Sb09g004940 I 0.869
Ciclev10002348m.g Citrus clementina Ciclev10002348m.g I 0.869
orange1.1g028221m.g Citrus sinensis orange1.1g028221m.g I 0.869
cassava31953.m1 Manihot esculenta cassava31953.m1 I 0.869
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.869
TRIUR3_34193 Triticum urartu TRIUR3_34193 I 0.869
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.869
Pavir.Eb03580 Panicum virgatum Pavir.Eb03580 I 0.869
Pm000277 Prunus mume Pm000277 I 0.869
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.869
Pavir.J00291 Panicum virgatum Pavir.J00291 I 0.869
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.869
F775_52636 Aegilops tauschii F775_52636 I 0.869
F775_25790 Aegilops tauschii F775_25790 I 0.869
OBART01G35680 Oryza barthii OBART01G35680 I 0.869
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.869
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.869
LPERR05G04040 Leersia perrieri LPERR05G04040 I 0.869
GSMUA_Achr7G22200_001 Musa acuminata GSMUA_Achr7G22200_001 I 0.869
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.869
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.869
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.869
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.869
POPTR_0013s15220 Populus trichocarpa POPTR_0013s15220 I 0.869
OS01G0825000 Oryza sativa OS01G0825000 I 0.869
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.869
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.869
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.869
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.859
TRAES3BF078900060CFD_g Triticum aestivum TRAES3BF078900060CFD_g I 0.859
OB01G44400 Oryza brachyantha OB01G44400 I 0.859
GRMZM5G868471 Zea mays GRMZM5G868471 I 0.859
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.859
Bo4g172950 Brassica oleracea Bo4g172950 I 0.859
Pavir.Ca01098 Panicum virgatum Pavir.Ca01098 I 0.859
Bra021627 Brassica rapa Bra021627 I 0.859
LBD13 Arabidopsis lyrata fgenesh2_kg.4__1005__AT2G30340.1 I 0.859
GRMZM2G092517 Zea mays GRMZM2G092517 I 0.859
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.859
Thhalv10017073m.g Eutrema salsugineum Thhalv10017073m.g I 0.848
Bo4g059520 Brassica oleracea Bo4g059520 I 0.848
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.848
BRADI2G34520 Brachypodium distachyon BRADI2G34520 I 0.848
Cagra.0567s0001 Capsella grandiflora Cagra.0567s0001 I 0.848
LBD13 Arabidopsis thaliana AT2G30340 D 0.848
Bra018320 Brassica rapa Bra018320 I 0.848
Bostr.24513s0205 Boechera stricta Bostr.24513s0205 I 0.848
SELMODRAFT_37169 Selaginella moellendorffii SELMODRAFT_37169 I 0.848
SELMODRAFT_26920 Selaginella moellendorffii SELMODRAFT_26920 I 0.848
Bo4g190140 Brassica oleracea Bo4g190140 I 0.842
Carubv10024870m.g Capsella rubella Carubv10024870m.g I 0.838
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.828
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.828
Lus10029061.g Linum usitatissimum Lus10029061.g I 0.818
OB05G14280 Oryza brachyantha OB05G14280 I 0.798
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.797
OLONG_007328 Oryza longistaminata OLONG_007328 I 0.768
SapurV1A.0085s0450 Salix purpurea SapurV1A.0085s0450 I 0.747
orange1.1g044340m.g Citrus sinensis orange1.1g044340m.g I 0.737
mgf026046m Mimulus guttatus mgf026046m I 0.737
Ciclev10006113m.g Citrus clementina Ciclev10006113m.g I 0.737
Pavir.J06256 Panicum virgatum Pavir.J06256 I 0.737
LBD3 Vitis vinifera VIT_19s0027g01120 I 0.737
Pavir.J18260 Panicum virgatum Pavir.J18260 I 0.737
Pavir.J13923 Panicum virgatum Pavir.J13923 I 0.737
SELMODRAFT_48883 Selaginella moellendorffii SELMODRAFT_48883 I 0.727
Bra021612 Brassica rapa Bra021612 I 0.727
Bo4g170770 Brassica oleracea Bo4g170770 I 0.727
gene30046-v1.0-hybrid Fragaria vesca gene30046-v1.0-hybrid I 0.727
Si026864m.g Setaria italica Si026864m.g I 0.727
Si037583m.g Setaria italica Si037583m.g I 0.727
SELMODRAFT_58936 Selaginella moellendorffii SELMODRAFT_58936 I 0.727
PK11564.1 Cannabis sativa PK11564.1 I 0.727
Solyc11g045530.1 Solanum lycopersicum Solyc11g045530.1 I 0.727
Pavir.Ib04170 Panicum virgatum Pavir.Ib04170 I 0.727
cassava20471.m1 Manihot esculenta cassava20471.m1 I 0.727
PGSC0003DMG400008649 Solanum tuberosum PGSC0003DMG400008649 I 0.727
Pavir.Ia01095 Panicum virgatum Pavir.Ia01095 I 0.727
Cucsa.118370 Cucumis sativus Cucsa.118370 I 0.727
Cla013678 Citrullus lanatus Cla013678 I 0.727
Sb01g012810 Sorghum bicolor Sb01g012810 I 0.727
TCM_032557 Theobroma cacao TCM_032557 I 0.727
30169.m006340 Ricinus communis 30169.m006340 I 0.727
GRMZM2G025989 Zea mays GRMZM2G025989 I 0.717
Gorai.002G104500 Gossypium raimondii Gorai.002G104500 I 0.717
Bo3g024350 Brassica oleracea Bo3g024350 I 0.717
ASL5 Arabidopsis lyrata fgenesh2_kg.4__983__AT2G30130.1 I 0.717
Lus10031191.g Linum usitatissimum Lus10031191.g I 0.717
MDP0000284409 Malus domestica MDP0000284409 I 0.717
Bra018335 Brassica rapa Bra018335 I 0.717
GRMZM2G079185 Zea mays GRMZM2G079185 I 0.717
orange1.1g036782m.g Citrus sinensis orange1.1g036782m.g I 0.717
POPTR_0010s19180 Populus trichocarpa POPTR_0010s19180 I 0.717
MDP0000268890 Malus domestica MDP0000268890 I 0.717
PRUPE_ppa012504mg Prunus persica PRUPE_ppa012504mg I 0.717
Bo4g059700 Brassica oleracea Bo4g059700 I 0.717
MDP0000155138 Malus domestica MDP0000155138 I 0.717
Bra022780 Brassica rapa Bra022780 I 0.717
LBD12 Arabidopsis thaliana AT2G30130 I 0.717
PRUPE_ppa012253mg Prunus persica PRUPE_ppa012253mg I 0.717
BGIOSGA013249 Oryza indica BGIOSGA013249 I 0.717
OGLUM04G05130 Oryza glumaepatula OGLUM04G05130 I 0.717
POPTR_0007s08290 Populus trichocarpa POPTR_0007s08290 I 0.717
Solyc06g050950.2 Solanum lycopersicum Solyc06g050950.2 I 0.717
Bostr.15697s0446 Boechera stricta Bostr.15697s0446 I 0.717
MTR_5g083230 Medicago truncatula MTR_5g083230 I 0.717
PGSC0003DMG400023939 Solanum tuberosum PGSC0003DMG400023939 I 0.717
cassava30732.valid.m1 Manihot esculenta cassava30732.valid.m1 I 0.717
ORUFI03G29410 Oryza rufipogon ORUFI03G29410 I 0.717
Pm011040 Prunus mume Pm011040 I 0.717
OMERI03G24920 Oryza meridionalis OMERI03G24920 I 0.717
Ciclev10032929m.g Citrus clementina Ciclev10032929m.g I 0.717
ONIVA03G29300 Oryza nivara ONIVA03G29300 I 0.717
Carubv10025543m.g Capsella rubella Carubv10025543m.g I 0.717
PRUPE_ppa012322mg Prunus persica PRUPE_ppa012322mg I 0.707
cassava20865.m1 Manihot esculenta cassava20865.m1 I 0.707
chr6.CM0738.260.nd Lotus japonicus chr6.CM0738.260.nd I 0.707
Cucsa.239660 Cucumis sativus Cucsa.239660 I 0.707
Ca_06548 Cicer arietinum Ca_06548 I 0.707
Ca_08998 Cicer arietinum Ca_08998 I 0.707
TCM_042447 Theobroma cacao TCM_042447 I 0.707
cassava27818.m1 Manihot esculenta cassava27818.m1 I 0.707
Ca_13575 Cicer arietinum Ca_13575 I 0.707
MTR_4g083680 Medicago truncatula MTR_4g083680 I 0.707
SapurV1A.0284s0080 Salix purpurea SapurV1A.0284s0080 I 0.707
SapurV1A.0673s0190 Salix purpurea SapurV1A.0673s0190 I 0.707
Pm018982 Prunus mume Pm018982 I 0.707
SapurV1A.0061s0670 Salix purpurea SapurV1A.0061s0670 I 0.707
Thhalv10008917m.g Eutrema salsugineum Thhalv10008917m.g I 0.707
29729.m002278 Ricinus communis 29729.m002278 I 0.707
SapurV1A.0042s0120 Salix purpurea SapurV1A.0042s0120 I 0.707
Ca_12450 Cicer arietinum Ca_12450 I 0.707
Aquca_030_00227 Aquilegia coerulea Aquca_030_00227 I 0.707
LBD4 Arabidopsis lyrata fgenesh1_pm.C_scaffold_1002773 I 0.707
POPTR_0008s07280 Populus trichocarpa POPTR_0008s07280 I 0.707
Carubv10010462m.g Capsella rubella Carubv10010462m.g I 0.707
POPTR_0009s08060 Populus trichocarpa POPTR_0009s08060 I 0.707
LBD4 Arabidopsis thaliana AT1G31320 D 0.707
gene21039-v1.0-hybrid Fragaria vesca gene21039-v1.0-hybrid I 0.707
gene20083-v1.0-hybrid Fragaria vesca gene20083-v1.0-hybrid I 0.707
Eucgr.B03991 Eucalyptus grandis Eucgr.B03991 I 0.707
evm.TU.supercontig_192.6 Carica papaya evm.TU.supercontig_192.6 I 0.707
GRMZM2G447176 Zea mays GRMZM2G447176 I 0.707
evm.TU.supercontig_2.374 Carica papaya evm.TU.supercontig_2.374 I 0.707
Gorai.010G195100 Gossypium raimondii Gorai.010G195100 I 0.707
SELMODRAFT_49085 Selaginella moellendorffii SELMODRAFT_49085 I 0.707
MDP0000121203 Malus domestica MDP0000121203 I 0.707
Lus10031769.g Linum usitatissimum Lus10031769.g I 0.707
Aquca_118_00035 Aquilegia coerulea Aquca_118_00035 I 0.707
Eucgr.E02016 Eucalyptus grandis Eucgr.E02016 I 0.707
Solyc06g082310.2 Solanum lycopersicum Solyc06g082310.2 I 0.707
Lus10031285.g Linum usitatissimum Lus10031285.g I 0.707
Bostr.29246s0022 Boechera stricta Bostr.29246s0022 I 0.707
SELMODRAFT_49084 Selaginella moellendorffii SELMODRAFT_49084 I 0.707
Lus10018275.g Linum usitatissimum Lus10018275.g I 0.707
Cagra.1508s0061 Capsella grandiflora Cagra.1508s0061 I 0.707
PGSC0003DMG400030456 Solanum tuberosum PGSC0003DMG400030456 I 0.707
MTR_2g068760 Medicago truncatula MTR_2g068760 I 0.707