Pm019028 (Prunus mume)
LOB

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03195 (DUF260) IPR004883 Pm019028 T246386_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
LBD13
M06956_2.00 		Arabidopsis thaliana
YGSCGDNDDHNVCGGHG
CDCCGBNDHHNHCGSCR		 Dap-seq
OMalley et al.(2016)
LBD13_col_a 		0.764 0.764
LBD13
M06957_2.00 		Arabidopsis thaliana
CGSCGNNDDWNNCGG
CCGNNWHHNNCGSCG		 Dap-seq
OMalley et al.(2016)
LBD13_colamp_a 		0.764 0.764
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pm019028 LOB 1 55

Links

Other LOB family TFs
Other Prunus mume TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_19.92 Carica papaya evm.TU.supercontig_19.92 I 0.927
Cagra.1642s0010 Capsella grandiflora Cagra.1642s0010 I 0.909
Bostr.23794s0013 Boechera stricta Bostr.23794s0013 I 0.909
chr1.CM0125.30.nd Lotus japonicus chr1.CM0125.30.nd I 0.909
LBD15 Arabidopsis thaliana AT2G40470 I 0.909
Carubv10024002m.g Capsella rubella Carubv10024002m.g I 0.909
Aquca_005_00169 Aquilegia coerulea Aquca_005_00169 I 0.909
LBD15 Arabidopsis lyrata fgenesh2_kg.4__2164__AT2G40470.1 I 0.909
LjSGA_040320.1 Lotus japonicus LjSGA_040320.1 I 0.902
POPTR_0013s08040 Populus trichocarpa POPTR_0013s08040 I 0.891
Gorai.013G005900 Gossypium raimondii Gorai.013G005900 I 0.891
Bra004572 Brassica rapa Bra004572 I 0.891
Bo4g190210 Brassica oleracea Bo4g190210 I 0.873
chr2.CM1032.110.nc Lotus japonicus chr2.CM1032.110.nc I 0.873
Bra016992 Brassica rapa Bra016992 I 0.873
PGSC0003DMG400029080 Solanum tuberosum PGSC0003DMG400029080 I 0.855
Solyc06g050430.2 Solanum lycopersicum Solyc06g050430.2 I 0.855
GSMUA_Achr11G08330_001 Musa acuminata GSMUA_Achr11G08330_001 I 0.855
PK03716.1 Cannabis sativa PK03716.1 I 0.853
Bo4g190140 Brassica oleracea Bo4g190140 I 0.842
29957.m001411 Ricinus communis 29957.m001411 I 0.836
MTR_5g075020 Medicago truncatula MTR_5g075020 I 0.836
ORUFI05G04770 Oryza rufipogon ORUFI05G04770 I 0.800
ORGLA05G0042200 Oryza glaberrima ORGLA05G0042200 I 0.800
OS05G0165450 Oryza sativa OS05G0165450 I 0.800
OGLUM05G04450 Oryza glumaepatula OGLUM05G04450 I 0.800
ONIVA05G04920 Oryza nivara ONIVA05G04920 I 0.800
BGIOSGA018747 Oryza indica BGIOSGA018747 I 0.800
OBART05G04570 Oryza barthii OBART05G04570 I 0.800
GSMUA_AchrUn_randomG14060_001 Musa acuminata GSMUA_AchrUn_randomG14060_001 I 0.800
OMERI05G04500 Oryza meridionalis OMERI05G04500 I 0.800
Traes_1AS_43FB6A3CF Triticum aestivum Traes_1AS_43FB6A3CF I 0.782
Traes_1DS_BB8508CC6 Triticum aestivum Traes_1DS_BB8508CC6 I 0.782
Traes_1BS_8F922CA93 Triticum aestivum Traes_1BS_8F922CA93 I 0.782
BRADI2G53690 Brachypodium distachyon BRADI2G53690 I 0.782
MLOC_16076 Hordeum vulgare MLOC_16076 I 0.782
MLOC_56075 Hordeum vulgare MLOC_56075 I 0.782
F775_52636 Aegilops tauschii F775_52636 I 0.782
PDK_20s1537041g001 Phoenix dactylifera PDK_20s1537041g001 N 0.780
Pavir.Ea03276 Panicum virgatum Pavir.Ea03276 I 0.764
ORUFI01G39050 Oryza rufipogon ORUFI01G39050 I 0.764
OGLUM01G39690 Oryza glumaepatula OGLUM01G39690 I 0.764
OLONG_000658 Oryza longistaminata OLONG_000658 I 0.764
OBART01G35680 Oryza barthii OBART01G35680 I 0.764
LPERR01G30700 Leersia perrieri LPERR01G30700 I 0.764
BGIOSGA004719 Oryza indica BGIOSGA004719 I 0.764
Cla006731 Citrullus lanatus Cla006731 I 0.764
OMERI01G32750 Oryza meridionalis OMERI01G32750 I 0.764
Si004575m.g Setaria italica Si004575m.g I 0.764
OS01G0825000 Oryza sativa OS01G0825000 I 0.764
ORGLA01G0294900 Oryza glaberrima ORGLA01G0294900 I 0.764
OPUNC01G34540 Oryza punctata OPUNC01G34540 I 0.764
ONIVA01G40640 Oryza nivara ONIVA01G40640 I 0.764
PDK_20s1387061g002 Phoenix dactylifera PDK_20s1387061g002 I 0.745
Sb03g038410 Sorghum bicolor Sb03g038410 I 0.745
PK17019.1 Cannabis sativa PK17019.1 I 0.735
PDK_20s1448121g001 Phoenix dactylifera PDK_20s1448121g001 N 0.729
Lus10034208.g Linum usitatissimum Lus10034208.g I 0.709