CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Pm025578
(
Prunus mume
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
Pm025578
T257084_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pm025578
MADS box
11
58
LIPNEGTRKMTFRKRKKSIYKKADELSKLCGIDVCLIVYEADQKKGRA
Links
Other
MADS box
family TFs
Other
Prunus mume
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
PRUPE_ppa023499mg
Prunus persica
PRUPE_ppa023499mg
N
1.000
PRUPE_ppa026256mg
Prunus persica
PRUPE_ppa026256mg
N
1.000
Pm025575
Prunus mume
Pm025575
N
1.000
PRUPE_ppa018410mg
Prunus persica
PRUPE_ppa018410mg
N
0.978
Pm025576
Prunus mume
Pm025576
N
0.956
PRUPE_ppa013383mg
Prunus persica
PRUPE_ppa013383mg
N
0.867
Pm025614
Prunus mume
Pm025614
N
0.867
Pm025630
Prunus mume
Pm025630
N
0.800
MDP0000185853
Malus domestica
MDP0000185853
N
0.733
MDP0000303501
Malus domestica
MDP0000303501
N
0.711