16568_YMR042W (Saccharomyces mikatae)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 16568_YMR042W T259297_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARG80
M08426_2.00 		Saccharomyces cerevisiae
WGACDC
GHGTCW		 ChIP-chip
Mathelier et al.(2014)
MA0271.1 		0.979 0.979
ARG80
M08588_2.00 		Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN		 Misc
DeBoer et al.(2011)
YMR042W_1483 		0.979 0.979
ARG80
M10989_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ARGRI_01 		0.979 0.979
MCM1
M01558_2.00 		Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR		 PBM
Zhu et al.(2009)
Mcm1 		0.771 0.771
MCM1
M08589_2.00 		Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND		 Misc
DeBoer et al.(2011)
YMR043W_831 		0.771 0.771
MCM1
M10990_2.00 		Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW		 Transfac
Matys et al.(2006)
F$MCM1_01 		0.771 0.771
MCM1
M10991_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_02 		0.771 0.771
MCM1
M10992_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$MCM1_Q6 		0.771 0.771
MCM1
M08458_2.00 		Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA		 COMPILED
Mathelier et al.(2014)
MA0331.1 		0.771 0.771
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
16568_YMR042W MADS box 94 141

Links

Other MADS box family TFs
Other Saccharomyces mikatae TFs

71 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ARG80 Saccharomyces cerevisiae YMR042W D 0.979
17148_YMR042W Saccharomyces paradoxus 17148_YMR042W I 0.979
18574_YMR042W Saccharomyces bayanus 18574_YMR042W I 0.979
NCAS_0A12960 Naumovozyma castellii NCAS_0A12960 I 0.917
Scas_Contig709.27 Saccharomyces castellii Scas_Contig709.27 I 0.917
ZBAI_03536 Zygosaccharomyces bailii ZBAI_03536 I 0.896
ZBAI_08534 Zygosaccharomyces bailii ZBAI_08534 I 0.896
ZYRO0F00748g Zygosaccharomyces rouxii ZYRO0F00748g I 0.896
NDAI_0B01290 Naumovozyma dairenensis NDAI_0B01290 I 0.875
KAFR_0B05290 Kazachstania africana KAFR_0B05290 I 0.854
KNAG_0M02350 Kazachstania naganishii KNAG_0M02350 I 0.854
TDEL_0B07000 Torulaspora delbrueckii TDEL_0B07000 I 0.854
CAGL0F06259g Candida glabrata CAGL0F06259g I 0.833
CAGL0I10769g Candida glabrata CAGL0I10769g I 0.792
KAFR_0B05280 Kazachstania africana KAFR_0B05280 I 0.792
NCAS_0H03140 Naumovozyma castellii NCAS_0H03140 I 0.792
Scas_Contig649.23 Saccharomyces castellii Scas_Contig649.23 I 0.792
H311_00382 Anncaliia algerae H311_00382 I 0.778
CAGL0F06237g Candida glabrata CAGL0F06237g I 0.771
KAFR_0A03700 Kazachstania africana KAFR_0A03700 I 0.771
KNAG_0H00480 Kazachstania naganishii KNAG_0H00480 I 0.771
Kpol_1073p26 Vanderwaltozyma polyspora Kpol_1073p26 I 0.771
Kpol_262p3 Vanderwaltozyma polyspora Kpol_262p3 I 0.771
NCAS_0A12970 Naumovozyma castellii NCAS_0A12970 I 0.771
NDAI_0B01280 Naumovozyma dairenensis NDAI_0B01280 I 0.771
NDAI_0C00510 Naumovozyma dairenensis NDAI_0C00510 I 0.771
SKUD_077902 Saccharomyces kudriavzevii SKUD_077902 I 0.771
SU7_2521 Saccharomyces arboricola SU7_2521 I 0.771
TBLA_0B06860 Tetrapisispora blattae TBLA_0B06860 I 0.771
TBLA_0G01960 Tetrapisispora blattae TBLA_0G01960 I 0.771
TDEL_0B07010 Torulaspora delbrueckii TDEL_0B07010 I 0.771
TPHA_0C02530 Tetrapisispora phaffii TPHA_0C02530 I 0.771
TPHA_0N01520 Tetrapisispora phaffii TPHA_0N01520 I 0.771
MCM1 Saccharomyces cerevisiae YMR043W D 0.771
ZBAI_03537 Zygosaccharomyces bailii ZBAI_03537 I 0.771
ZBAI_08535 Zygosaccharomyces bailii ZBAI_08535 I 0.771
ZYRO0F00726g Zygosaccharomyces rouxii ZYRO0F00726g I 0.771
Scas_Contig709.26 Saccharomyces castellii Scas_Contig709.26 I 0.771
16570_YMR043W Saccharomyces mikatae 16570_YMR043W I 0.771
17142_YMR043W Saccharomyces paradoxus 17142_YMR043W I 0.771
18568_YMR043W Saccharomyces bayanus 18568_YMR043W I 0.771
RO3G_11614 Rhizopus oryzae RO3G_11614 I 0.729
AACERI_AaceriABR098C Saccharomycetaceae sp ashbya aceri AACERI_AaceriABR098C I 0.729
AGOS_ABR098C Ashbya gossypii AGOS_ABR098C I 0.729
CANTEDRAFT_132918 Candida tenuis CANTEDRAFT_132918 I 0.729
Ecym_2292 Eremothecium cymbalariae Ecym_2292 I 0.729
KLLA0_F26807g Kluyveromyces lactis KLLA0_F26807g I 0.729
KLTH0B04026g Lachancea thermotolerans KLTH0B04026g I 0.729
LALA0_S06e03510g Lachancea lanzarotensis LALA0_S06e03510g I 0.729
gw1.27.105.1 Phycomyces blakesleeanus gw1.27.105.1 I 0.729
gw1.5.917.1 Mucor circinelloides gw1.5.917.1 I 0.729
KLTH0B04026g Kluyveromyces thermotolerans KLTH0B04026g I 0.729
Kwal_15001 Kluyveromyces waltii Kwal_15001 I 0.729
SAKL0B11704g Lachancea kluyveri SAKL0B11704g I 0.729
SNOG_07763 Stagonospora nodorum SNOG_07763 I 0.724
AWRI1499_3592 Brettanomyces bruxellensis AWRI1499_3592 I 0.724
SNOG_07764 Phaeosphaeria nodorum SNOG_07764 I 0.724
fgenesh1_kg.C_scaffold_2000029 Cochliobolus heterostrophus C5 fgenesh1_kg.C_scaffold_2000029 I 0.724
RO3G_06121 Rhizopus oryzae RO3G_06121 I 0.708
RO3G_15079 Rhizopus oryzae RO3G_15079 I 0.708
PNEG_00576 Pneumocystis murina PNEG_00576 I 0.708
e_gw1.1.687.1 Phycomyces blakesleeanus e_gw1.1.687.1 I 0.708
e_gw1.4.1161.1 Mucor circinelloides e_gw1.4.1161.1 I 0.708
estExt_fgeneshMC_pm.C_40429 Mucor circinelloides estExt_fgeneshMC_pm.C_40429 I 0.708
fgeneshPB_pg.1__662 Phycomyces blakesleeanus fgeneshPB_pg.1__662 I 0.708
gw1.3.516.1 Phycomyces blakesleeanus gw1.3.516.1 I 0.708
gw1.8.565.1 Mucor circinelloides gw1.8.565.1 I 0.708
LDEC007646 Leptinotarsa decemlineata LDEC007646 I 0.708
PredSwiss_ASS2010_3106.1 Pneumocystis carinii PredSwiss_ASS2010_3106.1 I 0.708
PredSwiss_CON2646.1 Pneumocystis carinii PredSwiss_CON2646.1 I 0.708
PredSwiss_CON3093.1 Pneumocystis carinii PredSwiss_CON3093.1 I 0.708