CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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17148_YMR042W
(
Saccharomyces paradoxus
)
MADS box
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00319 (SRF-TF)
IPR002100
17148_YMR042W
T259300_2.00
Superfamily (2010-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ARG80
M08426_2.00
Saccharomyces cerevisiae
WGACDC
GHGTCW
ChIP-chip
Mathelier et al.(2014)
MA0271.1
1.000
1.000
ARG80
M08588_2.00
Saccharomyces cerevisiae
NNDVCBNVBDNGRHAR
YTDYCNHVBNVGBHNN
Misc
DeBoer et al.(2011)
YMR042W_1483
1.000
1.000
ARG80
M10989_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$ARGRI_01
1.000
1.000
MCM1
M01558_2.00
Saccharomyces cerevisiae
YNNWWNNRGN
NCYNNWWNNR
PBM
Zhu et al.(2009)
Mcm1
0.771
0.771
MCM1
M08589_2.00
Saccharomyces cerevisiae
HNHTWCCBDWWHVGGAHDHN
NDHDTCCBDWWHVGGWADND
Misc
DeBoer et al.(2011)
YMR043W_831
0.771
0.771
MCM1
M10990_2.00
Saccharomyces cerevisiae
WNDCCYAAWNNGGWMW
WKWCCNNWTTRGGHNW
Transfac
Matys et al.(2006)
F$MCM1_01
0.771
0.771
MCM1
M10991_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_02
0.771
0.771
MCM1
M10992_2.00
Saccharomyces cerevisiae
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
F$MCM1_Q6
0.771
0.771
MCM1
M08458_2.00
Saccharomyces cerevisiae
TTCCYRAWNNGG
CCNNWTYRGGAA
COMPILED
Mathelier et al.(2014)
MA0331.1
0.771
0.771
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
17148_YMR042W
MADS box
93
140
YIENKTRRHVTFSKRRHGIMKKAYELSVLTGANILLLILANSGLVYTF
Links
Other
MADS box
family TFs
Other
Saccharomyces paradoxus
TFs
74 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ARG80
Saccharomyces cerevisiae
YMR042W
D
1.000
18574_YMR042W
Saccharomyces bayanus
18574_YMR042W
I
1.000
16568_YMR042W
Saccharomyces mikatae
16568_YMR042W
I
0.979
NCAS_0A12960
Naumovozyma castellii
NCAS_0A12960
I
0.917
Scas_Contig709.27
Saccharomyces castellii
Scas_Contig709.27
I
0.917
ZBAI_03536
Zygosaccharomyces bailii
ZBAI_03536
I
0.896
ZBAI_08534
Zygosaccharomyces bailii
ZBAI_08534
I
0.896
ZYRO0F00748g
Zygosaccharomyces rouxii
ZYRO0F00748g
I
0.896
NDAI_0B01290
Naumovozyma dairenensis
NDAI_0B01290
I
0.875
KAFR_0B05290
Kazachstania africana
KAFR_0B05290
I
0.854
KNAG_0M02350
Kazachstania naganishii
KNAG_0M02350
I
0.854
TDEL_0B07000
Torulaspora delbrueckii
TDEL_0B07000
I
0.854
CAGL0F06259g
Candida glabrata
CAGL0F06259g
I
0.833
CAGL0I10769g
Candida glabrata
CAGL0I10769g
I
0.792
KAFR_0B05280
Kazachstania africana
KAFR_0B05280
I
0.792
NCAS_0H03140
Naumovozyma castellii
NCAS_0H03140
I
0.792
Scas_Contig649.23
Saccharomyces castellii
Scas_Contig649.23
I
0.792
H311_00382
Anncaliia algerae
H311_00382
I
0.778
CAGL0F06237g
Candida glabrata
CAGL0F06237g
I
0.771
KAFR_0A03700
Kazachstania africana
KAFR_0A03700
I
0.771
KNAG_0H00480
Kazachstania naganishii
KNAG_0H00480
I
0.771
Kpol_1073p26
Vanderwaltozyma polyspora
Kpol_1073p26
I
0.771
Kpol_262p3
Vanderwaltozyma polyspora
Kpol_262p3
I
0.771
NCAS_0A12970
Naumovozyma castellii
NCAS_0A12970
I
0.771
NDAI_0B01280
Naumovozyma dairenensis
NDAI_0B01280
I
0.771
NDAI_0C00510
Naumovozyma dairenensis
NDAI_0C00510
I
0.771
SKUD_077902
Saccharomyces kudriavzevii
SKUD_077902
I
0.771
SU7_2521
Saccharomyces arboricola
SU7_2521
I
0.771
TBLA_0B06860
Tetrapisispora blattae
TBLA_0B06860
I
0.771
TBLA_0G01960
Tetrapisispora blattae
TBLA_0G01960
I
0.771
TDEL_0B07010
Torulaspora delbrueckii
TDEL_0B07010
I
0.771
TPHA_0C02530
Tetrapisispora phaffii
TPHA_0C02530
I
0.771
TPHA_0N01520
Tetrapisispora phaffii
TPHA_0N01520
I
0.771
MCM1
Saccharomyces cerevisiae
YMR043W
D
0.771
ZBAI_03537
Zygosaccharomyces bailii
ZBAI_03537
I
0.771
ZBAI_08535
Zygosaccharomyces bailii
ZBAI_08535
I
0.771
ZYRO0F00726g
Zygosaccharomyces rouxii
ZYRO0F00726g
I
0.771
Scas_Contig709.26
Saccharomyces castellii
Scas_Contig709.26
I
0.771
16570_YMR043W
Saccharomyces mikatae
16570_YMR043W
I
0.771
17142_YMR043W
Saccharomyces paradoxus
17142_YMR043W
I
0.771
18568_YMR043W
Saccharomyces bayanus
18568_YMR043W
I
0.771
RO3G_11614
Rhizopus oryzae
RO3G_11614
I
0.729
AACERI_AaceriABR098C
Saccharomycetaceae sp ashbya aceri
AACERI_AaceriABR098C
I
0.729
AGOS_ABR098C
Ashbya gossypii
AGOS_ABR098C
I
0.729
CANTEDRAFT_132918
Candida tenuis
CANTEDRAFT_132918
I
0.729
Ecym_2292
Eremothecium cymbalariae
Ecym_2292
I
0.729
KLLA0_F26807g
Kluyveromyces lactis
KLLA0_F26807g
I
0.729
KLTH0B04026g
Lachancea thermotolerans
KLTH0B04026g
I
0.729
LALA0_S06e03510g
Lachancea lanzarotensis
LALA0_S06e03510g
I
0.729
gw1.27.105.1
Phycomyces blakesleeanus
gw1.27.105.1
I
0.729
gw1.5.917.1
Mucor circinelloides
gw1.5.917.1
I
0.729
KLTH0B04026g
Kluyveromyces thermotolerans
KLTH0B04026g
I
0.729
Kwal_15001
Kluyveromyces waltii
Kwal_15001
I
0.729
SAKL0B11704g
Lachancea kluyveri
SAKL0B11704g
I
0.729
AEPI007009
Anopheles epiroticus
AEPI007009
I
0.727
AFUN006149
Anopheles funestus
AFUN006149
I
0.727
ALUE_0001693901
Ascaris lumbricoides
ALUE_0001693901
I
0.727
SNOG_07763
Stagonospora nodorum
SNOG_07763
I
0.724
AWRI1499_3592
Brettanomyces bruxellensis
AWRI1499_3592
I
0.724
SNOG_07764
Phaeosphaeria nodorum
SNOG_07764
I
0.724
fgenesh1_kg.C_scaffold_2000029
Cochliobolus heterostrophus C5
fgenesh1_kg.C_scaffold_2000029
I
0.724
RO3G_06121
Rhizopus oryzae
RO3G_06121
I
0.708
RO3G_15079
Rhizopus oryzae
RO3G_15079
I
0.708
PNEG_00576
Pneumocystis murina
PNEG_00576
I
0.708
e_gw1.1.687.1
Phycomyces blakesleeanus
e_gw1.1.687.1
I
0.708
e_gw1.4.1161.1
Mucor circinelloides
e_gw1.4.1161.1
I
0.708
estExt_fgeneshMC_pm.C_40429
Mucor circinelloides
estExt_fgeneshMC_pm.C_40429
I
0.708
fgeneshPB_pg.1__662
Phycomyces blakesleeanus
fgeneshPB_pg.1__662
I
0.708
gw1.3.516.1
Phycomyces blakesleeanus
gw1.3.516.1
I
0.708
gw1.8.565.1
Mucor circinelloides
gw1.8.565.1
I
0.708
LDEC007646
Leptinotarsa decemlineata
LDEC007646
I
0.708
PredSwiss_ASS2010_3106.1
Pneumocystis carinii
PredSwiss_ASS2010_3106.1
I
0.708
PredSwiss_CON2646.1
Pneumocystis carinii
PredSwiss_CON2646.1
I
0.708
PredSwiss_CON3093.1
Pneumocystis carinii
PredSwiss_CON3093.1
I
0.708