chr4.LjT16L01.50.nd (Lotus japonicus)
MADS box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00319 (SRF-TF) IPR002100 chr4.LjT16L01.50.nd T259336_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AGL91
M10922_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT3G66656_01 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
chr4.LjT16L01.50.nd MADS box 10 57

Links

Other MADS box family TFs
Other Lotus japonicus TFs

59 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_017605.1 Lotus japonicus LjSGA_017605.1 I 0.938
GLYMA08G38880 Glycine max GLYMA08G38880 I 0.896
GLYMA18G20830 Glycine max GLYMA18G20830 I 0.896
MTR_4g131030 Medicago truncatula MTR_4g131030 I 0.896
Ca_05023 Cicer arietinum Ca_05023 I 0.896
GLYMA05G35820 Glycine max GLYMA05G35820 I 0.875
Ca_24185 Cicer arietinum Ca_24185 I 0.875
MTR_1g047550 Medicago truncatula MTR_1g047550 I 0.854
MTR_1g054265 Medicago truncatula MTR_1g054265 I 0.854
MTR_1g063160 Medicago truncatula MTR_1g063160 I 0.854
MTR_8g051580 Medicago truncatula MTR_8g051580 I 0.854
MTR_8g079502 Medicago truncatula MTR_8g079502 I 0.854
chr3.CM0059.60.nd Lotus japonicus chr3.CM0059.60.nd N 0.854
GLYMA05G35811 Glycine max GLYMA05G35811 I 0.833
GLYMA08G03793 Glycine max GLYMA08G03793 N 0.833
GLYMA08G03830 Glycine max GLYMA08G03830 I 0.833
GLYMA08G03820 Glycine max GLYMA08G03820 I 0.792
MTR_8g046350 Medicago truncatula MTR_8g046350 N 0.792
Eucgr.D00312 Eucalyptus grandis Eucgr.D00312 N 0.771
AGL91 Arabidopsis thaliana AT3G66656 D 0.750
AGL91 Arabidopsis lyrata fgenesh2_kg.3__679__AT3G66656.1 I 0.750
cassava10519.m1 Manihot esculenta cassava10519.m1 I 0.750
Bostr.22252s0371 Boechera stricta Bostr.22252s0371 I 0.750
Cagra.0133s0015 Capsella grandiflora Cagra.0133s0015 I 0.750
Carubv10014761m.g Capsella rubella Carubv10014761m.g I 0.750
Ciclev10017472m.g Citrus clementina Ciclev10017472m.g I 0.750
Eucgr.D00311 Eucalyptus grandis Eucgr.D00311 N 0.750
Eucgr.D00313 Eucalyptus grandis Eucgr.D00313 N 0.750
Gorai.010G165500 Gossypium raimondii Gorai.010G165500 I 0.750
MDP0000120467 Malus domestica MDP0000120467 N 0.750
orange1.1g037442m.g Citrus sinensis orange1.1g037442m.g I 0.750
Thhalv10022154m.g Eutrema salsugineum Thhalv10022154m.g I 0.750
Bo4g182590 Brassica oleracea Bo4g182590 I 0.729
Bra021910 Brassica rapa Bra021910 I 0.729
POPTR_0004s13600 Populus trichocarpa POPTR_0004s13600 N 0.729
TCM_029518 Theobroma cacao TCM_029518 I 0.729
Cla019897 Citrullus lanatus Cla019897 N 0.729
29693.m002039 Ricinus communis 29693.m002039 I 0.729
evm.TU.supercontig_25.93 Carica papaya evm.TU.supercontig_25.93 I 0.729
gene30567-v1.0-hybrid Fragaria vesca gene30567-v1.0-hybrid I 0.729
MDP0000274606 Malus domestica MDP0000274606 N 0.729
Thhalv10017825m.g Eutrema salsugineum Thhalv10017825m.g I 0.729
AGL29 Arabidopsis thaliana AT2G34440 I 0.708
AGL29 Arabidopsis lyrata fgenesh2_kg.4__1464__AT2G34440.1 I 0.708
PRUPE_ppa024816mg Prunus persica PRUPE_ppa024816mg I 0.708
VIT_03s0088g00550 Vitis vinifera VIT_03s0088g00550 N 0.708
Pm030655 Prunus mume Pm030655 I 0.708
Cucsa.212320 Cucumis sativus Cucsa.212320 N 0.708
Aquca_041_00050 Aquilegia coerulea Aquca_041_00050 N 0.708
Bostr.23794s0666 Boechera stricta Bostr.23794s0666 I 0.708
Cagra.7352s0007 Capsella grandiflora Cagra.7352s0007 I 0.708
Carubv10025656m.g Capsella rubella Carubv10025656m.g I 0.708
gene07364-v1.0-hybrid Fragaria vesca gene07364-v1.0-hybrid N 0.708
gene14058-v1.0-hybrid Fragaria vesca gene14058-v1.0-hybrid I 0.708
Gorai.002G213500 Gossypium raimondii Gorai.002G213500 N 0.708
MDP0000168914 Malus domestica MDP0000168914 N 0.708
SapurV1A.0019s0690 Salix purpurea SapurV1A.0019s0690 N 0.708
SapurV1A.0560s0040 Salix purpurea SapurV1A.0560s0040 N 0.708
SapurV1A.2238s0010 Salix purpurea SapurV1A.2238s0010 N 0.708