CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.1681s0059
(
Capsella grandiflora
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Cagra.1681s0059
T264625_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.1681s0059.1.p
mTERF
26
123
STSKPLYLKFQTSQRENLRHLSSLGIVPQNPRLAPPANDLPVILSAVDFLKSKGISDDDFPRLVFLCPQLFSPTFDISKLDPVFDFLTGELGASAEES
Cagra.1681s0059.1.p
mTERF
108
272
VFDFLTGELGASAEESRGLIVNCPNILLSDVEYCLRPTLVYLKELGIRNLNRASKTNAHVLNTRVEKLRAKMRFLKSIGFEHQEAARVCGRIPAIFGYSVEDNLRPKYEFLVYDMERELEELKKFPQYFGFSLGKRIKPRHWHLKKKNVEVSLSRMLMWGDQKFY
Links
Other
mTERF
family TFs
Other
Capsella grandiflora
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
AT3G18870
Arabidopsis thaliana
AT3G18870
N
0.914
Thhalv10022350m.g
Eutrema salsugineum
Thhalv10022350m.g
N
0.855
Carubv10015534m.g
Capsella rubella
Carubv10015534m.g
N
0.824
scaffold_302233.1
Arabidopsis lyrata
scaffold_302233.1
N
0.804
Bo5g116880
Brassica oleracea
Bo5g116880
N
0.792
Bostr.19424s0770
Boechera stricta
Bostr.19424s0770
N
0.773
Bra022367
Brassica rapa
Bra022367
N
0.761