CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.3262s0017
(
Capsella grandiflora
)
mTERF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02536 (mTERF)
IPR003690
Cagra.3262s0017
T264632_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.3262s0017.1.p
mTERF
149
257
PFFESLGLCPHEFEPFLPQKLMFLSDDGIMFENFHVLCNYGIPRGKIGRMYKEAREIFRYESGLLASKLRDYENLGLSKGTVIKLVTSCPLLLVGGIDAEFSSVVDKLK
Cagra.3262s0017.1.p
mTERF
285
516
IEFLDKVGCKDEKLSSLLKKYPALVIEGSGKKFYVLFGRLFKVGLQVDEIYSLFIDNPEMLSDKCVNNIQKTLDFLIAIKMETQFITKILLGHMELIGSCSLQAPRTACLSLNVRQDELCQILKKEPLRLFSFVSTTNKRKSKPLSEDSRKHSEKTAFLLRLGYLENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNHNVVTEIIRHAPMILNLSKDVIEKKIHSLTELLG
Cagra.3262s0017.1.p
mTERF
428
570
PLSEDSRKHSEKTAFLLRLGYLENSDEMVKALKQFRGRGDQLQERFDCLVKAGLNHNVVTEIIRHAPMILNLSKDVIEKKIHSLTELLGYPIESLVRFPAYLCYDMERIHHRFSMYLWLRERDAAKPMLSPSTILTCGDARFV
Links
Other
mTERF
family TFs
Other
Capsella grandiflora
TFs
7 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Carubv10004425m.g
Capsella rubella
Carubv10004425m.g
N
0.993
scaffold_702442.1
Arabidopsis lyrata
scaffold_702442.1
N
0.947
AT4G19650
Arabidopsis thaliana
AT4G19650
N
0.940
Bostr.30275s0443
Boechera stricta
Bostr.30275s0443
N
0.894
Thhalv10024740m.g
Eutrema salsugineum
Thhalv10024740m.g
N
0.846
Bra013414
Brassica rapa
Bra013414
N
0.759
Bo1g021780
Brassica oleracea
Bo1g021780
N
0.735