APRR4 (Arabidopsis lyrata)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00249 (Myb_DNA-binding) IPR014778 fgenesh1_pg.C_scaffold_8000961 T270689_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARR18
M02313_2.00 		Arabidopsis thaliana
NNNNAGATAYGNN
NNCRTATCTNNNN		 PBM
Weirauch et al.(2014)
pTH8840 		0.683 0.723
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh1_pg.C_scaffold_8000961 Myb 223 273

Links

Other Myb/SANT family TFs
Other Arabidopsis lyrata TFs

50 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LjSGA_125152.1 Lotus japonicus LjSGA_125152.1 I 0.776
LjSGA_066155.1 Lotus japonicus LjSGA_066155.1 I 0.748
Pm027701 Prunus mume Pm027701 I 0.741
PRUPE_ppa018934mg Prunus persica PRUPE_ppa018934mg I 0.741
Solyc12g010330.1 Solanum lycopersicum Solyc12g010330.1 I 0.725
PGSC0003DMG400007823 Solanum tuberosum PGSC0003DMG400007823 I 0.725
cassava37074.valid.m1 Manihot esculenta cassava37074.valid.m1 I 0.722
29737.m001227 Ricinus communis 29737.m001227 I 0.722
cassava262.valid.m1 Manihot esculenta cassava262.valid.m1 I 0.722
cassava18405.valid.m1 Manihot esculenta cassava18405.valid.m1 I 0.722
Cagra.0891s0003 Capsella grandiflora Cagra.0891s0003 I 0.722
SapurV1A.0347s0250 Salix purpurea SapurV1A.0347s0250 I 0.722
chr6.CM0037.920.nc Lotus japonicus chr6.CM0037.920.nc I 0.722
SapurV1A.0100s0230 Salix purpurea SapurV1A.0100s0230 I 0.722
Gorai.001G030600 Gossypium raimondii Gorai.001G030600 I 0.722
Bostr.26833s0442 Boechera stricta Bostr.26833s0442 I 0.722
Carubv10026052m.g Capsella rubella Carubv10026052m.g I 0.722
cassava37075.valid.m1 Manihot esculenta cassava37075.valid.m1 I 0.722
cassava18404.valid.m1 Manihot esculenta cassava18404.valid.m1 I 0.722
POPTR_0018s11960 Populus trichocarpa POPTR_0018s11960 I 0.722
POPTR_0006s20220 Populus trichocarpa POPTR_0006s20220 I 0.722
GLYMA15G24770 Glycine max GLYMA15G24770 I 0.722
GLYMA09G14650 Glycine max GLYMA09G14650 I 0.722
TCM_037098 Theobroma cacao TCM_037098 I 0.722
orange1.1g009670m.g Citrus sinensis orange1.1g009670m.g I 0.716
chr5.CM0345.260.nd Lotus japonicus chr5.CM0345.260.nd I 0.712
LjSGA_060038.1 Lotus japonicus LjSGA_060038.1 I 0.707
Eucgr.C00380 Eucalyptus grandis Eucgr.C00380 I 0.707
Gorai.004G291100 Gossypium raimondii Gorai.004G291100 I 0.707
evm.TU.supercontig_46.117 Carica papaya evm.TU.supercontig_46.117 I 0.707
Gorai.009G054200 Gossypium raimondii Gorai.009G054200 I 0.707
Thhalv10005377m.g Eutrema salsugineum Thhalv10005377m.g N 0.705
Thhalv10015296m.g Eutrema salsugineum Thhalv10015296m.g I 0.704
Bra020390 Brassica rapa Bra020390 I 0.704
Bo2g028820 Brassica oleracea Bo2g028820 I 0.704
GLYMA05G34516 Glycine max GLYMA05G34516 I 0.687
ARR18 Arabidopsis thaliana AT5G58080 D 0.683
ARR18 Arabidopsis lyrata Al_scaffold_0008_2276 I 0.683
Pm005877 Prunus mume Pm005877 I 0.683
PRUPE_ppa002493mg Prunus persica PRUPE_ppa002493mg I 0.683
GLYMA02G09451 Glycine max GLYMA02G09451 I 0.681
GLYMA07G26890 Glycine max GLYMA07G26890 I 0.681
MDP0000124301 Malus domestica MDP0000124301 I 0.681
Ca_15151 Cicer arietinum Ca_15151 I 0.681
MDP0000155328 Malus domestica MDP0000155328 I 0.681
Cla007104 Citrullus lanatus Cla007104 N 0.680
MLOC_61880 Hordeum vulgare MLOC_61880 I 0.667
MDP0000311914 Malus domestica MDP0000311914 I 0.663
TCM_015085 Theobroma cacao TCM_015085 I 0.663
MTR_1g032570 Medicago truncatula MTR_1g032570 I 0.663