Gorai.012G132200 (Gossypium raimondii)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 Gorai.012G132200 T287792_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.773 0.903
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.773 0.903
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.749 0.871
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.740 0.903
MYB49
M07140_2.00 		Arabidopsis thaliana
HDBBYYACCWAMYWH
DWRKTWGGTRRVVHD		 Dap-seq
OMalley et al.(2016)
MYB49_col_a 		0.693 0.839
MYB49
M07141_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHN
NDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB49_colamp_a 		0.693 0.839
MYB92
M07123_2.00 		Arabidopsis thaliana
NHHACCTAMY
RKTAGGTDDN		 Dap-seq
OMalley et al.(2016)
MYB92_100ng20cy_b 		0.687 0.774
MYB92
M07124_2.00 		Arabidopsis thaliana
NNNNWNNYYYACCWAMYHH
DDRKTWGGTRRRNNWNNNN		 Dap-seq
OMalley et al.(2016)
MYB92_colamp_a 		0.687 0.774
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Gorai.012G132200.1 Myb 14 61
Gorai.012G132200.1 Myb 67 112

Links

Other Myb/SANT family TFs
Other Gossypium raimondii TFs

256 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
evm.TU.supercontig_34.69 Carica papaya evm.TU.supercontig_34.69 I 0.826
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.800
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.773
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.773
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.773
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.773
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.773
Cla019747 Citrullus lanatus Cla019747 I 0.773
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.773
Bo1g051220 Brassica oleracea Bo1g051220 I 0.772
Bra026281 Brassica rapa Bra026281 I 0.772
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.772
Cla007838 Citrullus lanatus Cla007838 I 0.770
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.770
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.765
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.765
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.762
Bo7g111870 Brassica oleracea Bo7g111870 I 0.754
Bra024224 Brassica rapa Bra024224 I 0.754
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.754
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.754
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.754
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.754
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.752
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.752
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.749
TCM_007904 Theobroma cacao TCM_007904 I 0.749
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.749
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.749
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.743
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.743
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.743
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.743
TCM_030009 Theobroma cacao TCM_030009 I 0.743
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.743
Cla001360 Citrullus lanatus Cla001360 I 0.743
29983.m003281 Ricinus communis 29983.m003281 I 0.743
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.743
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.743
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.743
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.743
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.743
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.743
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.743
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.743
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.743
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.742
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.740
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.740
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.740
Pm009892 Prunus mume Pm009892 I 0.740
mgf018114m Mimulus guttatus mgf018114m I 0.740
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.740
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.740
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.740
MDP0000492221 Malus domestica MDP0000492221 I 0.740
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.740
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.739
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.739
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.738
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.738
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.738
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.737
MDP0000144751 Malus domestica MDP0000144751 I 0.736
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.735
POPTR_0001s41920 Populus trichocarpa POPTR_0001s41920 I 0.735
Si030273m.g Setaria italica Si030273m.g I 0.735
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.735
SapurV1A.0840s0010 Salix purpurea SapurV1A.0840s0010 I 0.735
mgf023669m Mimulus guttatus mgf023669m I 0.734
mgf025298m Mimulus guttatus mgf025298m I 0.734
mgf026502m Mimulus guttatus mgf026502m I 0.734
SapurV1A.0417s0210 Salix purpurea SapurV1A.0417s0210 I 0.732
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.729
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.728
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.726
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.726
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.726
Ca_00232 Cicer arietinum Ca_00232 I 0.726
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.725
Bra038774 Brassica rapa Bra038774 I 0.724
Ca_14119 Cicer arietinum Ca_14119 I 0.724
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.723
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.723
GLYMA12G34650 Glycine max GLYMA12G34650 I 0.723
GLYMA13G35810 Glycine max GLYMA13G35810 I 0.723
GSMUA_Achr9G24560_001 Musa acuminata GSMUA_Achr9G24560_001 I 0.722
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.721
Bo3g162580 Brassica oleracea Bo3g162580 I 0.721
Bra020892 Brassica rapa Bra020892 I 0.721
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.721
PRUPE_ppa021577mg Prunus persica PRUPE_ppa021577mg I 0.721
Pm011657 Prunus mume Pm011657 I 0.721
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.721
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.721
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.721
Bo7g107420 Brassica oleracea Bo7g107420 I 0.720
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.719
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.719
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.719
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.718
TCM_031294 Theobroma cacao TCM_031294 I 0.718
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.717
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.716
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.716
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.716
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.715
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.715
Bo9g076410 Brassica oleracea Bo9g076410 I 0.713
Bra029553 Brassica rapa Bra029553 I 0.713
OS07G0558100 Oryza sativa OS07G0558100 I 0.713
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.712
evm.TU.supercontig_12.22 Carica papaya evm.TU.supercontig_12.22 I 0.712
Lus10018418.g Linum usitatissimum Lus10018418.g I 0.712
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.710
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.710
OBART07G18450 Oryza barthii OBART07G18450 I 0.710
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.710
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.710
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.710
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.710
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.710
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.710
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.709
Bo1g024170 Brassica oleracea Bo1g024170 I 0.704
Bra013526 Brassica rapa Bra013526 I 0.704
GSMUA_Achr6G29310_001 Musa acuminata GSMUA_Achr6G29310_001 I 0.704
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.703
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.702
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.702
Ca_22021 Cicer arietinum Ca_22021 I 0.702
Lus10039743.g Linum usitatissimum Lus10039743.g I 0.702
gene01992-v1.0-hybrid Fragaria vesca gene01992-v1.0-hybrid I 0.699
MDP0000468201 Malus domestica MDP0000468201 I 0.699
MDP0000710259 Malus domestica MDP0000710259 I 0.699
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.696
Thhalv10014125m.g Eutrema salsugineum Thhalv10014125m.g I 0.696
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.694
Traes_2AS_FA7059723 Triticum aestivum Traes_2AS_FA7059723 I 0.694
Gorai.002G077200 Gossypium raimondii Gorai.002G077200 I 0.694
MYB49 Arabidopsis thaliana AT5G54230 D 0.693
Bo3g022210 Brassica oleracea Bo3g022210 I 0.693
Bra029033 Brassica rapa Bra029033 I 0.693
fgenesh1_pg.C_scaffold_8001466 Arabidopsis lyrata fgenesh1_pg.C_scaffold_8001466 I 0.693
fgenesh1_pm.C_scaffold_8001114 Arabidopsis lyrata fgenesh1_pm.C_scaffold_8001114 I 0.693
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.693
MLOC_62436 Hordeum vulgare MLOC_62436 I 0.693
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.693
VIT_16s0039g01710 Vitis vinifera VIT_16s0039g01710 I 0.693
Pm015309 Prunus mume Pm015309 I 0.693
Bostr.26833s0846 Boechera stricta Bostr.26833s0846 I 0.693
Cagra.1629s0007 Capsella grandiflora Cagra.1629s0007 I 0.693
Carubv10026801m.g Capsella rubella Carubv10026801m.g I 0.693
F775_02918 Aegilops tauschii F775_02918 I 0.692
Traes_2DS_49959692B1 Triticum aestivum Traes_2DS_49959692B1 I 0.692
Traes_2DS_49959692B Triticum aestivum Traes_2DS_49959692B I 0.692
e_gw1.389.9.1 Physcomitrella patens e_gw1.389.9.1 I 0.692
Lus10002593.g Linum usitatissimum Lus10002593.g I 0.692
Bo3g005530 Brassica oleracea Bo3g005530 I 0.691
Ciclev10009050m.g Citrus clementina Ciclev10009050m.g I 0.691
orange1.1g045387m.g Citrus sinensis orange1.1g045387m.g I 0.691
MLOC_52134 Hordeum vulgare MLOC_52134 I 0.690
Si017785m.g Setaria italica Si017785m.g I 0.690
Traes_6AL_2BA02CAA9 Triticum aestivum Traes_6AL_2BA02CAA9 I 0.690
Traes_6BL_0D6CD031E Triticum aestivum Traes_6BL_0D6CD031E I 0.690
Traes_6DL_8BF29D46C Triticum aestivum Traes_6DL_8BF29D46C I 0.690
TRIUR3_03772 Triticum urartu TRIUR3_03772 I 0.690
cassava44382.m1 Manihot esculenta cassava44382.m1 I 0.690
AtMYB53 Arabidopsis thaliana AT5G65230 I 0.688
Bo3g099390 Brassica oleracea Bo3g099390 I 0.688
AtMYB53 Arabidopsis lyrata fgenesh2_kg.8__2570__AT5G65230.1 I 0.688
POPTR_0011s12750 Populus trichocarpa POPTR_0011s12750 I 0.688
Bostr.0568s0266 Boechera stricta Bostr.0568s0266 I 0.688
Cagra.0917s0061 Capsella grandiflora Cagra.0917s0061 I 0.688
Carubv10026822m.g Capsella rubella Carubv10026822m.g I 0.688
Ciclev10003251m.g Citrus clementina Ciclev10003251m.g I 0.688
MYB92 Arabidopsis thaliana AT5G10280 D 0.687
MYB92 Arabidopsis lyrata fgenesh2_kg.6__990__AT5G10280.1 I 0.687
Bostr.13175s0070 Boechera stricta Bostr.13175s0070 I 0.687
Cagra.1085s0031 Capsella grandiflora Cagra.1085s0031 I 0.687
Carubv10003148m.g Capsella rubella Carubv10003148m.g I 0.687
GRMZM2G159547 Zea mays GRMZM2G159547 I 0.686
OB07G24240 Oryza brachyantha OB07G24240 I 0.686
OPUNC06G07380 Oryza punctata OPUNC06G07380 I 0.686
Sb04g027540 Sorghum bicolor Sb04g027540 I 0.686
Si014103m.g Setaria italica Si014103m.g I 0.686
Gorai.009G236900 Gossypium raimondii Gorai.009G236900 I 0.686
Pm023191 Prunus mume Pm023191 I 0.683
Gorai.004G029000 Gossypium raimondii Gorai.004G029000 I 0.683
cassava39451.m1 Manihot esculenta cassava39451.m1 I 0.682
GLYMA01G02070 Glycine max GLYMA01G02070 I 0.681
TCM_016551 Theobroma cacao TCM_016551 I 0.679
MYB49 Vitis vinifera VIT_19s0014g03820 I 0.679
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.679
Thhalv10004620m.g Eutrema salsugineum Thhalv10004620m.g I 0.679
Bra006055 Brassica rapa Bra006055 I 0.678
Ciclev10020765m.g Citrus clementina Ciclev10020765m.g I 0.678
orange1.1g039198m.g Citrus sinensis orange1.1g039198m.g I 0.678
30054.m000809 Ricinus communis 30054.m000809 I 0.676
GSMUA_Achr9G14850_001 Musa acuminata GSMUA_Achr9G14850_001 I 0.675
LPERR02G26970 Leersia perrieri LPERR02G26970 I 0.675
OBART02G32900 Oryza barthii OBART02G32900 I 0.675
OGLUM02G33500 Oryza glumaepatula OGLUM02G33500 I 0.675
OMERI02G31500 Oryza meridionalis OMERI02G31500 I 0.675
ONIVA02G35050 Oryza nivara ONIVA02G35050 I 0.675
OPUNC02G30360 Oryza punctata OPUNC02G30360 I 0.675
ORGLA02G0284500 Oryza glaberrima ORGLA02G0284500 I 0.675
ORUFI02G34560 Oryza rufipogon ORUFI02G34560 I 0.675
BRADI3G58770 Brachypodium distachyon BRADI3G58770 I 0.673
F775_26732 Aegilops tauschii F775_26732 I 0.673
GSMUA_Achr1G23990_001 Musa acuminata GSMUA_Achr1G23990_001 I 0.673
Traes_6AL_52227091B Triticum aestivum Traes_6AL_52227091B I 0.673
Traes_6BL_5A2DB8F78 Triticum aestivum Traes_6BL_5A2DB8F78 I 0.673
Traes_6DL_499F64524 Triticum aestivum Traes_6DL_499F64524 I 0.673
TRIUR3_23397 Triticum urartu TRIUR3_23397 I 0.673
Bo2g009800 Brassica oleracea Bo2g009800 I 0.672
Bra028593 Brassica rapa Bra028593 I 0.672
Cla014358 Citrullus lanatus Cla014358 I 0.672
cassava17115.m1 Manihot esculenta cassava17115.m1 I 0.672
Cucsa.104340 Cucumis sativus Cucsa.104340 I 0.672
Thhalv10014028m.g Eutrema salsugineum Thhalv10014028m.g I 0.672
GSMUA_Achr3G06470_001 Musa acuminata GSMUA_Achr3G06470_001 I 0.670
GRMZM2G017268 Zea mays GRMZM2G017268 I 0.669
GRMZM2G110135 Zea mays GRMZM2G110135 I 0.669
MLOC_51960 Hordeum vulgare MLOC_51960 I 0.669
Sb07g028990 Sorghum bicolor Sb07g028990 I 0.669
TCM_025488 Theobroma cacao TCM_025488 I 0.669
Traes_7AS_B8E8A2F55 Triticum aestivum Traes_7AS_B8E8A2F55 I 0.669
TRIUR3_03304 Triticum urartu TRIUR3_03304 I 0.669
MYB39 Vitis vinifera VIT_02s0012g01650 I 0.669
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.669
cassava44885.m1 Manihot esculenta cassava44885.m1 I 0.669
Eucgr.B00023 Eucalyptus grandis Eucgr.B00023 I 0.669
Pavir.J03585 Panicum virgatum Pavir.J03585 I 0.669
SapurV1A.0039s0080 Salix purpurea SapurV1A.0039s0080 I 0.669
Bra024368 Brassica rapa Bra024368 I 0.668
POPTR_0007s05360 Populus trichocarpa POPTR_0007s05360 I 0.668
Gorai.007G348600 Gossypium raimondii Gorai.007G348600 I 0.668
chr3.CM0590.850.nc Lotus japonicus chr3.CM0590.850.nc I 0.668
TCM_016552 Theobroma cacao TCM_016552 I 0.667
cassava34465.m1 Manihot esculenta cassava34465.m1 I 0.666
Bo9g172290 Brassica oleracea Bo9g172290 I 0.665
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.665
GLYMA01G09280 Glycine max GLYMA01G09280 I 0.664
SapurV1A.0555s0160 Salix purpurea SapurV1A.0555s0160 I 0.664
GLYMA19G02890 Glycine max GLYMA19G02890 I 0.663
GSMUA_Achr10G19130_001 Musa acuminata GSMUA_Achr10G19130_001 I 0.663
PRUPE_ppa017039mg Prunus persica PRUPE_ppa017039mg I 0.663
Pm019588 Prunus mume Pm019588 I 0.663
evm.TU.supercontig_752.1 Carica papaya evm.TU.supercontig_752.1 I 0.663
Bostr.1460s0105 Boechera stricta Bostr.1460s0105 I 0.662
evm.TU.supercontig_90.68 Carica papaya evm.TU.supercontig_90.68 I 0.662
Pavir.Fa00604 Panicum virgatum Pavir.Fa00604 I 0.662
POPTR_0001s02240 Populus trichocarpa POPTR_0001s02240 I 0.661
SapurV1A.0495s0050 Salix purpurea SapurV1A.0495s0050 I 0.661
SapurV1A.4146s0010 Salix purpurea SapurV1A.4146s0010 I 0.661