gene01992-v1.0-hybrid (Fragaria vesca)
Myb/SANT

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00249 (Myb_DNA-binding) IPR014778 gene01992-v1.0-hybrid T287222_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK28187.1
M01286_2.00 		Cannabis sativa
TACCTACC
GGTAGGTA		 PBM
Lambert et al.(2019)
pTH11305 		0.784 0.925
AtMYB74
M07104_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB74_colamp_a 		0.781 0.892
AtMYB74
M07105_2.00 		Arabidopsis thaliana
BYHYACCTAMYHHH
DDDRKTAGGTRDRV		 Dap-seq
OMalley et al.(2016)
MYB74_col 		0.781 0.892
AtMYB41
M07109_2.00 		Arabidopsis thaliana
DHDBBYYACCTAMYW
WRKTAGGTRRVVHDH		 Dap-seq
OMalley et al.(2016)
MYB41_col_a 		0.743 0.860
MYB39
M07106_2.00 		Arabidopsis thaliana
NYYYACCTAMYWHH
DDWRKTAGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_col_a 		0.687 0.731
MYB39
M07107_2.00 		Arabidopsis thaliana
NYYYACCWAMYWHHHHHHHNH
DNDDDDDDDWRKTWGGTRRRN		 Dap-seq
OMalley et al.(2016)
MYB39_colamp_a 		0.687 0.731
For this family, TFs with SR scores > 0.661 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna01992.1-v1.0-hybrid Myb 14 61
mrna01992.1-v1.0-hybrid Myb 67 112

Links

Other Myb/SANT family TFs
Other Fragaria vesca TFs

242 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.1088s0050 Salix purpurea SapurV1A.1088s0050 I 0.805
SapurV1A.3561s0010 Salix purpurea SapurV1A.3561s0010 I 0.805
Solyc10g005460.2 Solanum lycopersicum Solyc10g005460.2 I 0.795
PGSC0003DMG400011250 Solanum tuberosum PGSC0003DMG400011250 I 0.793
LPERR07G15930 Leersia perrieri LPERR07G15930 I 0.784
OB07G24240 Oryza brachyantha OB07G24240 I 0.784
OBART07G18450 Oryza barthii OBART07G18450 I 0.784
OGLUM07G18250 Oryza glumaepatula OGLUM07G18250 I 0.784
OMERI07G15370 Oryza meridionalis OMERI07G15370 I 0.784
ONIVA06G20400 Oryza nivara ONIVA06G20400 I 0.784
OPUNC07G17410 Oryza punctata OPUNC07G17410 I 0.784
ORGLA07G0148800 Oryza glaberrima ORGLA07G0148800 I 0.784
ORUFI07G19200 Oryza rufipogon ORUFI07G19200 I 0.784
POPTR_0004s03310 Populus trichocarpa POPTR_0004s03310 I 0.784
Eucgr.E03689 Eucalyptus grandis Eucgr.E03689 I 0.784
Eucgr.E03819 Eucalyptus grandis Eucgr.E03819 I 0.784
MDP0000468201 Malus domestica MDP0000468201 I 0.784
MDP0000710259 Malus domestica MDP0000710259 I 0.784
Thhalv10029512m.g Eutrema salsugineum Thhalv10029512m.g I 0.784
AtMYB74 Arabidopsis lyrata Al_scaffold_0006_3584 I 0.781
AtMYB74 Arabidopsis thaliana AT4G05100 D 0.781
OS07G0558100 Oryza sativa OS07G0558100 I 0.781
PGSC0003DMG400022399 Solanum tuberosum PGSC0003DMG400022399 I 0.781
POPTR_0011s04120 Populus trichocarpa POPTR_0011s04120 I 0.781
PRUPE_ppa007438mg Prunus persica PRUPE_ppa007438mg I 0.781
Solyc02g079280.2 Solanum lycopersicum Solyc02g079280.2 I 0.781
TCM_007904 Theobroma cacao TCM_007904 I 0.781
TCM_030009 Theobroma cacao TCM_030009 I 0.781
VIT_00s0203g00070 Vitis vinifera VIT_00s0203g00070 I 0.781
AtMYB41 Vitis vinifera VIT_12s0134g00570 I 0.781
Cla001360 Citrullus lanatus Cla001360 I 0.781
Pm009892 Prunus mume Pm009892 I 0.781
cassava2558.valid.m1 Manihot esculenta cassava2558.valid.m1 I 0.781
cassava39892.m1 Manihot esculenta cassava39892.m1 I 0.781
Cucsa.045790 Cucumis sativus Cucsa.045790 I 0.781
mgf018114m Mimulus guttatus mgf018114m I 0.781
Ciclev10015729m.g Citrus clementina Ciclev10015729m.g I 0.781
Ciclev10017668m.g Citrus clementina Ciclev10017668m.g I 0.781
Eucgr.A01772 Eucalyptus grandis Eucgr.A01772 I 0.781
gene30725-v1.0-hybrid Fragaria vesca gene30725-v1.0-hybrid I 0.781
Gorai.009G174500 Gossypium raimondii Gorai.009G174500 I 0.781
Gorai.010G149300 Gossypium raimondii Gorai.010G149300 I 0.781
MDP0000492221 Malus domestica MDP0000492221 I 0.781
orange1.1g018154m.g Citrus sinensis orange1.1g018154m.g I 0.781
orange1.1g035629m.g Citrus sinensis orange1.1g035629m.g I 0.781
Bostr.2983s0050 Boechera stricta Bostr.2983s0050 I 0.779
BRADI1G24887 Brachypodium distachyon BRADI1G24887 I 0.778
GRMZM2G031323 Zea mays GRMZM2G031323 I 0.778
PRUPE_ppa016708mg Prunus persica PRUPE_ppa016708mg I 0.778
Si030273m.g Setaria italica Si030273m.g I 0.778
Pm015309 Prunus mume Pm015309 I 0.778
Eucgr.D00751 Eucalyptus grandis Eucgr.D00751 I 0.778
Pavir.Ba00668 Panicum virgatum Pavir.Ba00668 I 0.778
GLYMA13G32090 Glycine max GLYMA13G32090 I 0.777
GLYMA15G07230 Glycine max GLYMA15G07230 I 0.777
MTR_2g011660 Medicago truncatula MTR_2g011660 I 0.777
Ca_00232 Cicer arietinum Ca_00232 I 0.777
SapurV1A.0028s0230 Salix purpurea SapurV1A.0028s0230 I 0.777
Sb02g036250 Sorghum bicolor Sb02g036250 I 0.775
Cagra.1981s0006 Capsella grandiflora Cagra.1981s0006 I 0.775
Carubv10001366m.g Capsella rubella Carubv10001366m.g I 0.775
Pavir.J38204 Panicum virgatum Pavir.J38204 I 0.775
ATMYB102 Arabidopsis thaliana AT4G21440 I 0.769
ATMYB102 Arabidopsis lyrata fgenesh2_kg.7__2173__AT4G21440.1 I 0.769
Cagra.2455s0004 Capsella grandiflora Cagra.2455s0004 I 0.769
Carubv10004873m.g Capsella rubella Carubv10004873m.g I 0.769
Thhalv10027571m.g Eutrema salsugineum Thhalv10027571m.g I 0.769
Gorai.005G206300 Gossypium raimondii Gorai.005G206300 I 0.768
SapurV1A.0417s0210 Salix purpurea SapurV1A.0417s0210 I 0.768
Bo3g162580 Brassica oleracea Bo3g162580 I 0.766
Bo7g111870 Brassica oleracea Bo7g111870 I 0.766
Bra020892 Brassica rapa Bra020892 I 0.766
Bra024224 Brassica rapa Bra024224 I 0.766
Bra038774 Brassica rapa Bra038774 I 0.766
MTR_4g091490 Medicago truncatula MTR_4g091490 I 0.766
Gorai.008G151400 Gossypium raimondii Gorai.008G151400 I 0.764
Bo7g107420 Brassica oleracea Bo7g107420 I 0.762
GLYMA07G30860 Glycine max GLYMA07G30860 I 0.761
GLYMA08G06440 Glycine max GLYMA08G06440 I 0.760
Bostr.10689s0089 Boechera stricta Bostr.10689s0089 I 0.760
Lus10039743.g Linum usitatissimum Lus10039743.g I 0.759
SapurV1A.0048s0210 Salix purpurea SapurV1A.0048s0210 I 0.758
POPTR_0013s14480 Populus trichocarpa POPTR_0013s14480 I 0.756
cassava19500.valid.m1 Manihot esculenta cassava19500.valid.m1 I 0.756
GRMZM2G166337 Zea mays GRMZM2G166337 I 0.754
MLOC_62436 Hordeum vulgare MLOC_62436 I 0.754
Traes_2AS_FA7059723 Triticum aestivum Traes_2AS_FA7059723 I 0.754
Cla007838 Citrullus lanatus Cla007838 I 0.754
Cucsa.148040 Cucumis sativus Cucsa.148040 I 0.754
Ca_22021 Cicer arietinum Ca_22021 I 0.753
Bo1g024170 Brassica oleracea Bo1g024170 I 0.752
Bra013526 Brassica rapa Bra013526 I 0.752
Bo9g076410 Brassica oleracea Bo9g076410 I 0.751
Bra029553 Brassica rapa Bra029553 I 0.751
PGSC0003DMG400018331 Solanum tuberosum PGSC0003DMG400018331 I 0.751
PGSC0003DMG400026628 Solanum tuberosum PGSC0003DMG400026628 I 0.751
Solyc07g054840.2 Solanum lycopersicum Solyc07g054840.2 I 0.751
Solyc10g008700.1 Solanum lycopersicum Solyc10g008700.1 I 0.751
29983.m003281 Ricinus communis 29983.m003281 I 0.751
chr3.CM0711.160.nd Lotus japonicus chr3.CM0711.160.nd I 0.751
Bo1g051220 Brassica oleracea Bo1g051220 I 0.749
Bra026281 Brassica rapa Bra026281 I 0.749
Bostr.7867s0646 Boechera stricta Bostr.7867s0646 I 0.749
Cagra.1225s0085 Capsella grandiflora Cagra.1225s0085 I 0.749
Carubv10007810m.g Capsella rubella Carubv10007810m.g I 0.749
Thhalv10027463m.g Eutrema salsugineum Thhalv10027463m.g I 0.749
Lus10006740.g Linum usitatissimum Lus10006740.g I 0.748
Lus10020085.g Linum usitatissimum Lus10020085.g I 0.748
Cla019747 Citrullus lanatus Cla019747 I 0.747
Cucsa.126220 Cucumis sativus Cucsa.126220 I 0.747
F775_02918 Aegilops tauschii F775_02918 I 0.746
Traes_2DS_49959692B1 Triticum aestivum Traes_2DS_49959692B1 I 0.746
Traes_2DS_49959692B Triticum aestivum Traes_2DS_49959692B I 0.746
AtMYB41 Arabidopsis lyrata fgenesh1_pm.C_scaffold_7001108 I 0.745
AtMYB41 Arabidopsis thaliana AT4G28110 D 0.743
cassava41325.m1 Manihot esculenta cassava41325.m1 I 0.742
GSMUA_Achr9G12180_001 Musa acuminata GSMUA_Achr9G12180_001 I 0.739
GLYMA13G37820 Glycine max GLYMA13G37820 I 0.733
POPTR_0019s14070 Populus trichocarpa POPTR_0019s14070 I 0.729
MTR_2g089620 Medicago truncatula MTR_2g089620 I 0.726
Ca_14119 Cicer arietinum Ca_14119 I 0.726
Gorai.011G023800 Gossypium raimondii Gorai.011G023800 I 0.726
Lus10018418.g Linum usitatissimum Lus10018418.g I 0.726
GLYMA06G45460 Glycine max GLYMA06G45460 I 0.724
GLYMA12G11600 Glycine max GLYMA12G11600 I 0.720
evm.TU.supercontig_27.135 Carica papaya evm.TU.supercontig_27.135 I 0.720
AMTR_s00003p00271440 Amborella trichopoda AMTR_s00003p00271440 I 0.718
mgf023669m Mimulus guttatus mgf023669m I 0.715
mgf025298m Mimulus guttatus mgf025298m I 0.715
mgf026502m Mimulus guttatus mgf026502m I 0.715
GSMUA_Achr2G02970_001 Musa acuminata GSMUA_Achr2G02970_001 I 0.714
BGIOSGA016822 Oryza indica BGIOSGA016822 I 0.711
OB04G26860 Oryza brachyantha OB04G26860 I 0.711
ONIVA04G17990 Oryza nivara ONIVA04G17990 I 0.711
ORGLA04G0169000 Oryza glaberrima ORGLA04G0169000 I 0.711
ORUFI04G21320 Oryza rufipogon ORUFI04G21320 I 0.711
MDP0000145050 Malus domestica MDP0000145050 I 0.705
SapurV1A.0483s0100 Salix purpurea SapurV1A.0483s0100 I 0.704
Aquca_038_00198 Aquilegia coerulea Aquca_038_00198 I 0.703
Lus10002593.g Linum usitatissimum Lus10002593.g I 0.703
cassava25784.m1 Manihot esculenta cassava25784.m1 I 0.700
evm.TU.supercontig_34.69 Carica papaya evm.TU.supercontig_34.69 I 0.699
evm.TU.supercontig_44.60 Carica papaya evm.TU.supercontig_44.60 I 0.699
Gorai.012G132200 Gossypium raimondii Gorai.012G132200 I 0.699
GLYMA12G32610 Glycine max GLYMA12G32610 I 0.698
Solyc08g076700.1 Solanum lycopersicum Solyc08g076700.1 I 0.697
Cla006077 Citrullus lanatus Cla006077 I 0.697
Lus10003557.g Linum usitatissimum Lus10003557.g I 0.696
Lus10033889.g Linum usitatissimum Lus10033889.g I 0.696
Aquca_034_00364 Aquilegia coerulea Aquca_034_00364 I 0.692
POPTR_0011s12750 Populus trichocarpa POPTR_0011s12750 I 0.691
POPTR_0019s03490 Populus trichocarpa POPTR_0019s03490 I 0.691
VIT_07s0005g03340 Vitis vinifera VIT_07s0005g03340 I 0.691
Eucgr.F01069 Eucalyptus grandis Eucgr.F01069 I 0.691
PDK_20s1320951g001 Phoenix dactylifera PDK_20s1320951g001 I 0.691
ATMYB13 Arabidopsis lyrata fgenesh2_kg.1__590__AT1G06180.1 I 0.690
Cagra.3356s0071 Capsella grandiflora Cagra.3356s0071 I 0.690
Carubv10006864m.g Capsella rubella Carubv10006864m.g I 0.690
MYB49 Vitis vinifera VIT_19s0014g03820 I 0.689
TCM_004046 Theobroma cacao TCM_004046 I 0.688
Gorai.001G177100 Gossypium raimondii Gorai.001G177100 I 0.688
Gorai.007G146200 Gossypium raimondii Gorai.007G146200 I 0.688
MYB39 Arabidopsis thaliana AT4G17785 D 0.687
MYB39 Arabidopsis lyrata fgenesh2_kg.7__2528__AT4G17785.1 I 0.687
Bostr.30275s0243 Boechera stricta Bostr.30275s0243 I 0.687
Bo6g077600 Brassica oleracea Bo6g077600 I 0.685
PK20358.1 Cannabis sativa PK20358.1 I 0.685
GLYMA02G12242 Glycine max GLYMA02G12242 I 0.683
TCM_011658 Theobroma cacao TCM_011658 I 0.683
Gorai.013G088400 Gossypium raimondii Gorai.013G088400 I 0.682
TCM_001102 Theobroma cacao TCM_001102 I 0.681
Gorai.007G236800 Gossypium raimondii Gorai.007G236800 I 0.681
evm.TU.supercontig_50.19 Carica papaya evm.TU.supercontig_50.19 I 0.680
cassava37350.valid.m1 Manihot esculenta cassava37350.valid.m1 I 0.679
POPTR_0001s41920 Populus trichocarpa POPTR_0001s41920 I 0.678
SapurV1A.0840s0010 Salix purpurea SapurV1A.0840s0010 I 0.678
BRADI1G51747 Brachypodium distachyon BRADI1G51747 I 0.677
GSMUA_Achr4G21910_001 Musa acuminata GSMUA_Achr4G21910_001 I 0.677
PGSC0003DMG400016292 Solanum tuberosum PGSC0003DMG400016292 I 0.677
Si006790m.g Setaria italica Si006790m.g I 0.677
Solyc06g053610.2 Solanum lycopersicum Solyc06g053610.2 I 0.677
Eucgr.K03262 Eucalyptus grandis Eucgr.K03262 I 0.677
GLYMA03G41100 Glycine max GLYMA03G41100 I 0.676
GLYMA19G43740 Glycine max GLYMA19G43740 I 0.676
GSMUA_AchrUn_randomG15560_001 Musa acuminata GSMUA_AchrUn_randomG15560_001 I 0.676
POPTR_0005s24550 Populus trichocarpa POPTR_0005s24550 I 0.676
estExt_gwp_gw1.C_20043 Physcomitrella patens estExt_gwp_gw1.C_20043 I 0.676
Ciclev10021699m.g Citrus clementina Ciclev10021699m.g I 0.676
evm.TU.supercontig_36.134 Carica papaya evm.TU.supercontig_36.134 I 0.676
PGSC0003DMG400013405 Solanum tuberosum PGSC0003DMG400013405 I 0.674
cassava47180.m1 Manihot esculenta cassava47180.m1 I 0.674
e_gw1.389.9.1 Physcomitrella patens e_gw1.389.9.1 I 0.674
SapurV1A.1746s0010 Salix purpurea SapurV1A.1746s0010 I 0.674
GLYMA10G32410 Glycine max GLYMA10G32410 I 0.673
GLYMA20G35180 Glycine max GLYMA20G35180 I 0.673
Cucsa.053600 Cucumis sativus Cucsa.053600 I 0.672
TCM_026197 Theobroma cacao TCM_026197 I 0.671
GSMUA_Achr5G18600_001 Musa acuminata GSMUA_Achr5G18600_001 I 0.670
Sb06g023620 Sorghum bicolor Sb06g023620 I 0.670
Ciclev10026023m.g Citrus clementina Ciclev10026023m.g I 0.669
Gorai.011G173900 Gossypium raimondii Gorai.011G173900 I 0.669
orange1.1g045434m.g Citrus sinensis orange1.1g045434m.g I 0.669
SapurV1A.0495s0050 Salix purpurea SapurV1A.0495s0050 I 0.669
SapurV1A.4146s0010 Salix purpurea SapurV1A.4146s0010 I 0.669
Thhalv10008531m.g Eutrema salsugineum Thhalv10008531m.g I 0.669
POPTR_0019s06290 Populus trichocarpa POPTR_0019s06290 I 0.668
MDP0000144751 Malus domestica MDP0000144751 I 0.668
AMTR_s00032p00057800 Amborella trichopoda AMTR_s00032p00057800 I 0.667
GSMUA_Achr9G14850_001 Musa acuminata GSMUA_Achr9G14850_001 I 0.667
TCM_020889 Theobroma cacao TCM_020889 I 0.667
MLOC_68698 Hordeum vulgare MLOC_68698 I 0.666
Traes_2AL_41B71F83C Triticum aestivum Traes_2AL_41B71F83C I 0.666
Traes_2BL_79F1B50DF Triticum aestivum Traes_2BL_79F1B50DF I 0.666
Traes_2DL_5A0300CE0 Triticum aestivum Traes_2DL_5A0300CE0 I 0.666
Ca_12130 Cicer arietinum Ca_12130 I 0.666
Pm020596 Prunus mume Pm020596 I 0.666
MDP0000897594 Malus domestica MDP0000897594 I 0.666
orange1.1g024492m.g Citrus sinensis orange1.1g024492m.g I 0.666
TCM_031294 Theobroma cacao TCM_031294 I 0.665
Cagra.1671s0249 Capsella grandiflora Cagra.1671s0249 I 0.665
evm.TU.supercontig_12.22 Carica papaya evm.TU.supercontig_12.22 I 0.665
Lus10036472.g Linum usitatissimum Lus10036472.g I 0.665
Lus10041142.g Linum usitatissimum Lus10041142.g I 0.665
GSMUA_Achr6G29310_001 Musa acuminata GSMUA_Achr6G29310_001 I 0.664
VIT_05s0049g01020 Vitis vinifera VIT_05s0049g01020 I 0.664
Gorai.003G054100 Gossypium raimondii Gorai.003G054100 I 0.664
SapurV1A.0233s0280 Salix purpurea SapurV1A.0233s0280 I 0.664
GSMUA_Achr11G22820_001 Musa acuminata GSMUA_Achr11G22820_001 I 0.663
PGSC0003DMG400017223 Solanum tuberosum PGSC0003DMG400017223 I 0.663
POPTR_0008s16660 Populus trichocarpa POPTR_0008s16660 I 0.663
Solyc09g090130.2 Solanum lycopersicum Solyc09g090130.2 I 0.663
MTR_7g011170 Medicago truncatula MTR_7g011170 I 0.662
PRUPE_ppa026006mg Prunus persica PRUPE_ppa026006mg I 0.662
Solyc03g005570.2 Solanum lycopersicum Solyc03g005570.2 I 0.662
Pm004557 Prunus mume Pm004557 I 0.662
VIT_07s0141g00100 Vitis vinifera VIT_07s0141g00100 I 0.661
e_gw1.317.17.1 Physcomitrella patens e_gw1.317.17.1 I 0.661
gw1.66.160.1 Physcomitrella patens gw1.66.160.1 I 0.661
Bostr.25219s0339 Boechera stricta Bostr.25219s0339 I 0.661
Cagra.7286s0009 Capsella grandiflora Cagra.7286s0009 I 0.661
Carubv10023905m.g Capsella rubella Carubv10023905m.g I 0.661
Lus10022021.g Linum usitatissimum Lus10022021.g I 0.661