CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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PK29171.1
(
Cannabis sativa
)
Myb/SANT
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00249 (Myb_DNA-binding)
IPR014778
PK29171.1
T290496_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ATY53
M07078_2.00
Arabidopsis thaliana
YBYACCWAMCDHHNNNNNNNN
NNNNNNNNDDHGKTWGGTRVR
Dap-seq
OMalley et al.(2016)
MYB67_col_a
0.713
0.880
For this family, TFs with SR scores >
0.661
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
PK29171.1
Myb
2
39
IFLTHITTHGHGNWSSVPKLAGLQRCGKSCRLRWINYL
PK29171.1
Myb
45
90
KGSFTQEEEQIIIDVHRILGNRWAQIAKHLPGRTDNEVKNFWNSCI
Links
Other
Myb/SANT
family TFs
Other
Cannabis sativa
TFs
47 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Gorai.004G268300
Gossypium raimondii
Gorai.004G268300
I
0.747
cassava33147.m1
Manihot esculenta
cassava33147.m1
I
0.747
Pm010927
Prunus mume
Pm010927
I
0.738
Ciclev10006752m.g
Citrus clementina
Ciclev10006752m.g
I
0.718
cassava44228.m1
Manihot esculenta
cassava44228.m1
I
0.718
orange1.1g036087m.g
Citrus sinensis
orange1.1g036087m.g
I
0.718
TCM_033645
Theobroma cacao
TCM_033645
I
0.717
Solyc02g082040.2
Solanum lycopersicum
Solyc02g082040.2
I
0.715
ATY53
Arabidopsis thaliana
AT3G12720
D
0.713
Carubv10015099m.g
Capsella rubella
Carubv10015099m.g
I
0.713
Bostr.3640s0047
Boechera stricta
Bostr.3640s0047
I
0.713
Cagra.5641s0037
Capsella grandiflora
Cagra.5641s0037
I
0.713
SapurV1A.4138s0010
Salix purpurea
SapurV1A.4138s0010
I
0.711
SapurV1A.0149s0490
Salix purpurea
SapurV1A.0149s0490
I
0.711
30125.m001257
Ricinus communis
30125.m001257
I
0.710
Aquca_030_00294
Aquilegia coerulea
Aquca_030_00294
I
0.709
TCM_005977
Theobroma cacao
TCM_005977
I
0.709
PRUPE_ppa026618mg
Prunus persica
PRUPE_ppa026618mg
I
0.706
Pm010847
Prunus mume
Pm010847
I
0.706
orange1.1g039070m.g
Citrus sinensis
orange1.1g039070m.g
I
0.706
Ciclev10018009m.g
Citrus clementina
Ciclev10018009m.g
I
0.706
MDP0000157506
Malus domestica
MDP0000157506
I
0.706
ATY53
Arabidopsis lyrata
scaffold_301452.1
I
0.698
MDP0000226667
Malus domestica
MDP0000226667
I
0.696
GLYMA08G17371
Glycine max
GLYMA08G17371
I
0.691
Thhalv10022066m.g
Eutrema salsugineum
Thhalv10022066m.g
I
0.689
Bra034738
Brassica rapa
Bra034738
I
0.689
Bo5g133210
Brassica oleracea
Bo5g133210
I
0.689
Solyc10g005240.2
Solanum lycopersicum
Solyc10g005240.2
I
0.688
Eucgr.E04323
Eucalyptus grandis
Eucgr.E04323
I
0.686
SapurV1A.0122s0490
Salix purpurea
SapurV1A.0122s0490
I
0.684
27956.m000359
Ricinus communis
27956.m000359
I
0.684
Bra039339
Brassica rapa
Bra039339
I
0.683
Bo1g138990
Brassica oleracea
Bo1g138990
I
0.683
POPTR_0008s08110
Populus trichocarpa
POPTR_0008s08110
I
0.681
MTR_2g064160
Medicago truncatula
MTR_2g064160
I
0.676
VIT_01s0010g00410
Vitis vinifera
VIT_01s0010g00410
I
0.676
PRUPE_ppa022859mg
Prunus persica
PRUPE_ppa022859mg
I
0.674
ATY53
Vitis vinifera
VIT_19s0085g00940
I
0.671
PGSC0003DMG400007325
Solanum tuberosum
PGSC0003DMG400007325
I
0.670
GSMUA_Achr8G03510_001
Musa acuminata
GSMUA_Achr8G03510_001
I
0.667
GLYMA15G02955
Glycine max
GLYMA15G02955
I
0.667
cassava11527.m1
Manihot esculenta
cassava11527.m1
I
0.667
gene19715-v1.0-hybrid
Fragaria vesca
gene19715-v1.0-hybrid
I
0.666
Eucgr.F03143
Eucalyptus grandis
Eucgr.F03143
I
0.665
MTR_8g017540
Medicago truncatula
MTR_8g017540
I
0.664
POPTR_0003s15440
Populus trichocarpa
POPTR_0003s15440
I
0.662