Bra034439 (Brassica rapa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 Bra034439 T292678_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC017
M07174_2.00 		Arabidopsis thaliana
NCKTGNBNNNCAMGNWA
TWNCKTGNNNVNCAMGN		 Dap-seq
OMalley et al.(2016)
ANAC017_colamp_v31 		0.942 0.868
NAC017
M07175_2.00 		Arabidopsis thaliana
NDNTTNCTTGBNNNNCAMG
CKTGNNNNVCAAGNAANHN		 Dap-seq
OMalley et al.(2016)
ANAC017_col 		0.942 0.868
NAC017
M11078_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G34190_Q2 		0.942 0.868
anac016
M07172_2.00 		Arabidopsis thaliana
DVCKTGNBNNNCAMG
CKTGNNNVNCAMGBH		 Dap-seq
OMalley et al.(2016)
ANAC016_col_a 		0.936 0.939
anac016
M07173_2.00 		Arabidopsis thaliana
TVCKTGNBNNNCAMG
CKTGNNNVNCAMGBA		 Dap-seq
OMalley et al.(2016)
ANAC016_colamp_a 		0.936 0.939
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra034439.1-P NAC/NAM 13 139

Links

Other NAC/NAM family TFs
Other Brassica rapa TFs

19 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Bo5g085440 Brassica oleracea Bo5g085440 I 0.967
Thhalv10007196m.g Eutrema salsugineum Thhalv10007196m.g I 0.961
Bo6g044390 Brassica oleracea Bo6g044390 I 0.957
Bo8g027120 Brassica oleracea Bo8g027120 I 0.957
Bra036744 Brassica rapa Bra036744 I 0.957
anac017 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003048 I 0.945
Cagra.3375s0004 Capsella grandiflora Cagra.3375s0004 I 0.945
Carubv10008761m.g Capsella rubella Carubv10008761m.g I 0.945
Thhalv10007221m.g Eutrema salsugineum Thhalv10007221m.g I 0.945
NAC017 Arabidopsis thaliana AT1G34190 D 0.942
Bra034436 Brassica rapa Bra034436 I 0.941
anac016 Arabidopsis lyrata fgenesh2_kg.1__3525__AT1G34180.1 I 0.940
Bostr.1040s0050 Boechera stricta Bostr.1040s0050 I 0.939
anac016 Arabidopsis thaliana AT1G34180 D 0.936
Cagra.3375s0006 Capsella grandiflora Cagra.3375s0006 I 0.936
Carubv10008706m.g Capsella rubella Carubv10008706m.g I 0.936
Bostr.1040s0051 Boechera stricta Bostr.1040s0051 I 0.933
Bra028039 Brassica rapa Bra028039 I 0.918
Bo5g085430 Brassica oleracea Bo5g085430 I 0.909