Carubv10008706m.g (Capsella rubella)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF02365 (NAM) IPR003441 Carubv10008706m.g T297481_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
anac016
M07172_2.00 		Arabidopsis thaliana
DVCKTGNBNNNCAMG
CKTGNNNVNCAMGBH		 Dap-seq
OMalley et al.(2016)
ANAC016_col_a 		0.950 0.939
anac016
M07173_2.00 		Arabidopsis thaliana
TVCKTGNBNNNCAMG
CKTGNNNVNCAMGBA		 Dap-seq
OMalley et al.(2016)
ANAC016_colamp_a 		0.950 0.939
NAC017
M07174_2.00 		Arabidopsis thaliana
NCKTGNBNNNCAMGNWA
TWNCKTGNNNVNCAMGN		 Dap-seq
OMalley et al.(2016)
ANAC017_colamp_v31 		0.908 0.860
NAC017
M07175_2.00 		Arabidopsis thaliana
NDNTTNCTTGBNNNNCAMG
CKTGNNNNVCAAGNAANHN		 Dap-seq
OMalley et al.(2016)
ANAC017_col 		0.908 0.860
NAC017
M11078_2.00 		Arabidopsis thaliana Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$AT1G34190_Q2 		0.908 0.860
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10008706m NAC/NAM 13 139
Carubv10008886m NAC/NAM 2 78

Links

Other NAC/NAM family TFs
Other Capsella rubella TFs

20 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Cagra.3375s0006 Capsella grandiflora Cagra.3375s0006 I 0.963
Bostr.1040s0051 Boechera stricta Bostr.1040s0051 I 0.956
anac016 Arabidopsis lyrata fgenesh2_kg.1__3525__AT1G34180.1 I 0.954
anac016 Arabidopsis thaliana AT1G34180 D 0.950
Bo5g085440 Brassica oleracea Bo5g085440 I 0.936
Bra028039 Brassica rapa Bra028039 I 0.936
Bra034439 Brassica rapa Bra034439 I 0.936
Thhalv10007196m.g Eutrema salsugineum Thhalv10007196m.g I 0.933
Bo6g044390 Brassica oleracea Bo6g044390 I 0.925
Bo8g027120 Brassica oleracea Bo8g027120 I 0.925
Bra036744 Brassica rapa Bra036744 I 0.925
anac017 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1003048 I 0.910
Cagra.3375s0004 Capsella grandiflora Cagra.3375s0004 I 0.910
Carubv10008761m.g Capsella rubella Carubv10008761m.g I 0.910
NAC017 Arabidopsis thaliana AT1G34190 D 0.908
Bra034436 Brassica rapa Bra034436 I 0.900
Bostr.1040s0050 Boechera stricta Bostr.1040s0050 I 0.900
Thhalv10007221m.g Eutrema salsugineum Thhalv10007221m.g I 0.896
cassava19069.valid.m1 Manihot esculenta cassava19069.valid.m1 I 0.874