POPTR_0019s11330 (Populus trichocarpa)
NAC/NAM

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02365 (NAM) IPR003441 POPTR_0019s11330 T295359_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NAC030
M00974_2.00 		Arabidopsis thaliana
NYACGBMWNN
NNWKVCGTRN		 PBM
Lindemose et al.(2014)
VND7 		0.923 0.895
NAC037
M07187_2.00 		Arabidopsis thaliana
CKTVNDNHNYAMG
CKTRNDNHNBAMG		 Dap-seq
OMalley et al.(2016)
VND1_col_a 		0.915 0.842
ANAC076
M07224_2.00 		Arabidopsis thaliana
TRCKTVHNNHNYAMG
CKTRNDNNDBAMGYA		 Dap-seq
OMalley et al.(2016)
VND2_col_a 		0.899 0.833
ANAC076
M07225_2.00 		Arabidopsis thaliana
TTGCKTVHNNHNYAMGYHAHNNN
NNNDTDRCKTRNDNNDBAMGCAA		 Dap-seq
OMalley et al.(2016)
VND2_colamp_a 		0.899 0.833
NAC105
M00980_2.00 		Arabidopsis thaliana
NYWHKNHWNN
NNWDNMDWRN		 PBM
Lindemose et al.(2014)
VND3 		0.881 0.798
NAC105
M07245_2.00 		Arabidopsis thaliana
NTTGCTTVNNNHNYAMG
CKTRNDNNNBAAGCAAN		 Dap-seq
OMalley et al.(2016)
VND3_colamp_a 		0.881 0.798
NAC105
M07246_2.00 		Arabidopsis thaliana
TTGCTTVHNNHNYAMG
CKTRNDNNDBAAGCAA		 Dap-seq
OMalley et al.(2016)
VND3_col 		0.881 0.798
For this family, TFs with SR scores > 0.870 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0019s11330.1 NAC/NAM 6 133

Links

Other NAC/NAM family TFs
Other Populus trichocarpa TFs

145 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SapurV1A.0287s0280 Salix purpurea SapurV1A.0287s0280 I 0.972
SapurV1A.0287s0290 Salix purpurea SapurV1A.0287s0290 I 0.972
SapurV1A.1801s0020 Salix purpurea SapurV1A.1801s0020 I 0.972
SapurV1A.2633s0010 Salix purpurea SapurV1A.2633s0010 I 0.972
mgf009391m Mimulus guttatus mgf009391m I 0.948
SapurV1A.0179s0040 Salix purpurea SapurV1A.0179s0040 I 0.946
POPTR_0013s11740 Populus trichocarpa POPTR_0013s11740 I 0.944
Cla016604 Citrullus lanatus Cla016604 I 0.944
evm.TU.contig_30558 Carica papaya evm.TU.contig_30558 I 0.943
Cucsa.240650 Cucumis sativus Cucsa.240650 I 0.940
cassava25360.m1 Manihot esculenta cassava25360.m1 I 0.938
Ciclev10003255m.g Citrus clementina Ciclev10003255m.g I 0.937
orange1.1g019821m.g Citrus sinensis orange1.1g019821m.g I 0.937
29728.m000815 Ricinus communis 29728.m000815 I 0.936
Pm022184 Prunus mume Pm022184 I 0.932
PGSC0003DMG400026079 Solanum tuberosum PGSC0003DMG400026079 I 0.931
Solyc06g065410.2 Solanum lycopersicum Solyc06g065410.2 I 0.931
TCM_036364 Theobroma cacao TCM_036364 I 0.931
MDP0000849944 Malus domestica MDP0000849944 I 0.931
GLYMA20G31551 Glycine max GLYMA20G31551 I 0.930
PRUPE_ppa016236mg Prunus persica PRUPE_ppa016236mg I 0.929
MTR_1g096430 Medicago truncatula MTR_1g096430 I 0.927
PK11173.1 Cannabis sativa PK11173.1 I 0.927
Lus10017915.g Linum usitatissimum Lus10017915.g I 0.926
Bo6g114440 Brassica oleracea Bo6g114440 I 0.925
MDP0000902822 Malus domestica MDP0000902822 I 0.925
Aquca_006_00155 Aquilegia coerulea Aquca_006_00155 I 0.924
Eucgr.F02615 Eucalyptus grandis Eucgr.F02615 I 0.924
NAC030 Arabidopsis thaliana AT1G71930 D 0.923
Bra016098 Brassica rapa Bra016098 I 0.923
Ca_04309 Cicer arietinum Ca_04309 I 0.923
Bostr.10273s0160 Boechera stricta Bostr.10273s0160 I 0.923
Cagra.4006s0034 Capsella grandiflora Cagra.4006s0034 I 0.923
Carubv10020645m.g Capsella rubella Carubv10020645m.g I 0.923
Thhalv10018853m.g Eutrema salsugineum Thhalv10018853m.g I 0.923
Solyc11g018660.1 Solanum lycopersicum Solyc11g018660.1 I 0.922
cassava40790.m1 Manihot esculenta cassava40790.m1 I 0.922
PGSC0003DMG400000887 Solanum tuberosum PGSC0003DMG400000887 I 0.920
Bo2g075130 Brassica oleracea Bo2g075130 I 0.919
VND7 Vitis vinifera VIT_18s0072g01060 I 0.919
Gorai.003G010700 Gossypium raimondii Gorai.003G010700 I 0.919
Bra007996 Brassica rapa Bra007996 I 0.918
VND7 Arabidopsis lyrata fgenesh1_pm.C_scaffold_2001196 I 0.917
GLYMA10G36050 Glycine max GLYMA10G36050 I 0.916
POPTR_0005s11870 Populus trichocarpa POPTR_0005s11870 I 0.916
TCM_000235 Theobroma cacao TCM_000235 I 0.916
ANAC076 Vitis vinifera VIT_04s0023g03110 I 0.916
cassava24947.valid.m1 Manihot esculenta cassava24947.valid.m1 I 0.916
cassava26615.m1 Manihot esculenta cassava26615.m1 I 0.916
Aquca_007_00369 Aquilegia coerulea Aquca_007_00369 I 0.916
Ciclev10026114m.g Citrus clementina Ciclev10026114m.g I 0.916
evm.TU.supercontig_6.226 Carica papaya evm.TU.supercontig_6.226 I 0.916
orange1.1g021187m.g Citrus sinensis orange1.1g021187m.g I 0.916
SapurV1A.0487s0230 Salix purpurea SapurV1A.0487s0230 I 0.916
Thhalv10022756m.g Eutrema salsugineum Thhalv10022756m.g I 0.916
LjSGA_075859.1 Lotus japonicus LjSGA_075859.1 I 0.916
NAC037 Arabidopsis thaliana AT2G18060 D 0.915
Bo7g011640 Brassica oleracea Bo7g011640 I 0.915
PGSC0003DMG401003552 Solanum tuberosum PGSC0003DMG401003552 I 0.915
Solyc02g084350.2 Solanum lycopersicum Solyc02g084350.2 I 0.915
28623.m000400 Ricinus communis 28623.m000400 I 0.915
Gorai.008G063600 Gossypium raimondii Gorai.008G063600 I 0.915
Gorai.007G196400 Gossypium raimondii Gorai.007G196400 I 0.914
PDK_20s1306451g001 Phoenix dactylifera PDK_20s1306451g001 I 0.914
VND1 Arabidopsis lyrata Al_scaffold_0003_3772 I 0.913
Sb01g048730 Sorghum bicolor Sb01g048730 I 0.913
Si036363m.g Setaria italica Si036363m.g I 0.913
Eucgr.I02366 Eucalyptus grandis Eucgr.I02366 I 0.913
Pavir.Ib00161 Panicum virgatum Pavir.Ib00161 I 0.913
MTR_5g021710 Medicago truncatula MTR_5g021710 I 0.912
BGIOSGA011539 Oryza indica BGIOSGA011539 I 0.911
GSMUA_Achr11G03040_001 Musa acuminata GSMUA_Achr11G03040_001 I 0.911
GSMUA_Achr8G12100_001 Musa acuminata GSMUA_Achr8G12100_001 I 0.911
OB03G12100 Oryza brachyantha OB03G12100 I 0.911
OBART03G02180 Oryza barthii OBART03G02180 I 0.911
OGLUM03G02130 Oryza glumaepatula OGLUM03G02130 I 0.911
OLONG_011521 Oryza longistaminata OLONG_011521 I 0.911
OMERI03G02020 Oryza meridionalis OMERI03G02020 I 0.911
ONIVA03G01790 Oryza nivara ONIVA03G01790 I 0.911
OPUNC03G01920 Oryza punctata OPUNC03G01920 I 0.911
ORGLA03G0019500 Oryza glaberrima ORGLA03G0019500 I 0.911
ORUFI03G01920 Oryza rufipogon ORUFI03G01920 I 0.911
F775_20020 Aegilops tauschii F775_20020 I 0.910
LPERR03G01990 Leersia perrieri LPERR03G01990 I 0.910
Traes_4BL_03B8EA3BF Triticum aestivum Traes_4BL_03B8EA3BF I 0.910
Traes_4DL_54E14ABCB Triticum aestivum Traes_4DL_54E14ABCB I 0.910
Pavir.J32898 Panicum virgatum Pavir.J32898 I 0.910
BGIOSGA033343 Oryza indica BGIOSGA033343 I 0.909
Bo3g093950 Brassica oleracea Bo3g093950 I 0.909
OB10G23740 Oryza brachyantha OB10G23740 I 0.909
OS10G0532000 Oryza sativa OS10G0532000 I 0.909
Cucsa.043420 Cucumis sativus Cucsa.043420 I 0.909
Bo7g117820 Brassica oleracea Bo7g117820 I 0.908
Bra017750 Brassica rapa Bra017750 I 0.908
ANAC076 Arabidopsis lyrata fgenesh2_kg.7__450__AT4G36160.1 I 0.908
Ca_01981 Cicer arietinum Ca_01981 I 0.908
Cagra.4734s0006 Capsella grandiflora Cagra.4734s0006 I 0.908
Carubv10004997m.g Capsella rubella Carubv10004997m.g I 0.908
GLYMA01G37310 Glycine max GLYMA01G37310 I 0.907
GLYMA11G07990 Glycine max GLYMA11G07990 I 0.907
MLOC_56769 Hordeum vulgare MLOC_56769 I 0.907
mgf022574m Mimulus guttatus mgf022574m I 0.907
Bostr.18351s0273 Boechera stricta Bostr.18351s0273 I 0.906
PDK_20s1503311g001 Phoenix dactylifera PDK_20s1503311g001 I 0.906
Bo1g005810 Brassica oleracea Bo1g005810 I 0.903
Bra011667 Brassica rapa Bra011667 I 0.903
Lus10028372.g Linum usitatissimum Lus10028372.g I 0.903
Lus10041822.g Linum usitatissimum Lus10041822.g I 0.903
PRUPE_ppa022264mg Prunus persica PRUPE_ppa022264mg I 0.902
Pm026735 Prunus mume Pm026735 I 0.902
MDP0000136180 Malus domestica MDP0000136180 I 0.902
MDP0000176447 Malus domestica MDP0000176447 I 0.902
MDP0000298965 Malus domestica MDP0000298965 I 0.902
MDP0000299959 Malus domestica MDP0000299959 I 0.902
SapurV1A.0166s0460 Salix purpurea SapurV1A.0166s0460 I 0.902
SapurV1A.3982s0010 Salix purpurea SapurV1A.3982s0010 I 0.902
GRMZM2G025642 Zea mays GRMZM2G025642 I 0.901
OLONG_016152 Oryza longistaminata OLONG_016152 I 0.900
OMERI10G13220 Oryza meridionalis OMERI10G13220 I 0.900
gene14869-v1.0-hybrid Fragaria vesca gene14869-v1.0-hybrid I 0.900
ANAC076 Arabidopsis thaliana AT4G36160 D 0.899
Bostr.7867s1483 Boechera stricta Bostr.7867s1483 I 0.899
Thhalv10025510m.g Eutrema salsugineum Thhalv10025510m.g I 0.898
Bo7g065010 Brassica oleracea Bo7g065010 I 0.896
Bra012065 Brassica rapa Bra012065 I 0.896
ANAC105 Arabidopsis lyrata fgenesh2_kg.8__2792__AT5G66300.1 I 0.896
OBART10G16620 Oryza barthii OBART10G16620 I 0.896
OGLUM10G16690 Oryza glumaepatula OGLUM10G16690 I 0.896
ONIVA10G18400 Oryza nivara ONIVA10G18400 I 0.896
ORUFI10G17730 Oryza rufipogon ORUFI10G17730 I 0.896
Cla014492 Citrullus lanatus Cla014492 I 0.896
Bostr.0568s0042 Boechera stricta Bostr.0568s0042 I 0.896
Cagra.10427s0040 Capsella grandiflora Cagra.10427s0040 I 0.896
Carubv10026898m.g Capsella rubella Carubv10026898m.g I 0.896
Bra039915 Brassica rapa Bra039915 I 0.893
POPTR_0007s13910 Populus trichocarpa POPTR_0007s13910 I 0.892
Si039467m.g Setaria italica Si039467m.g I 0.884
Pavir.Ia02924 Panicum virgatum Pavir.Ia02924 I 0.883
Pavir.Ib02477 Panicum virgatum Pavir.Ib02477 I 0.883
NAC105 Arabidopsis thaliana AT5G66300 D 0.881
GLYMA16G24200 Glycine max GLYMA16G24200 I 0.881
AMTR_s00017p00119990 Amborella trichopoda AMTR_s00017p00119990 I 0.878
GLYMA02G05620 Glycine max GLYMA02G05620 I 0.877
Aquca_023_00039 Aquilegia coerulea Aquca_023_00039 I 0.875
Sb01g030760 Sorghum bicolor Sb01g030760 I 0.872