CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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gene12168-v1.0-hybrid
(
Fragaria vesca
)
NAC/NAM
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02365 (NAM)
IPR003441
gene12168-v1.0-hybrid
T297941_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
mrna12168.1-v1.0-hybrid
NAC/NAM
3
132
PTGFRFHPTDQELIGHYLFIKNNSDPVLETGSYLREFDMYGEIESWTIWEAYGGPLLDDQDLFFFTRLKKHGHRINRRIGSGTWSQGEPFKSVYAKNNQETPIGKKTKLRYENKNVTEQSGCWFMDEYST
Links
Other
NAC/NAM
family TFs
Other
Fragaria vesca
TFs
15 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene12133-v1.0-hybrid
Fragaria vesca
gene12133-v1.0-hybrid
N
0.999
Pm001156
Prunus mume
Pm001156
N
0.941
BGIOSGA029518
Oryza indica
BGIOSGA029518
N
0.922
OBART09G15000
Oryza barthii
OBART09G15000
N
0.922
OGLUM09G15640
Oryza glumaepatula
OGLUM09G15640
N
0.922
OMERI09G11680
Oryza meridionalis
OMERI09G11680
N
0.922
ONIVA09G15620
Oryza nivara
ONIVA09G15620
N
0.922
ORGLA09G0115600
Oryza glaberrima
ORGLA09G0115600
N
0.922
OPUNC09G13450
Oryza punctata
OPUNC09G13450
N
0.921
ORUFI09G16180
Oryza rufipogon
ORUFI09G16180
N
0.921
OS09G0493700
Oryza sativa
OS09G0493700
N
0.921
gene28487-v1.0-hybrid
Fragaria vesca
gene28487-v1.0-hybrid
N
0.919
orange1.1g038876m.g
Citrus sinensis
orange1.1g038876m.g
N
0.899
Pm001136
Prunus mume
Pm001136
N
0.889
Ciclev10033436m.g
Citrus clementina
Ciclev10033436m.g
N
0.885