npax-1 (Caenorhabditis elegans)
Paired box

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00292 (PAX) IPR001523 WBGene00017664 T312112_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anatomical structure development and regulation of transcription by RNA polymerase II. Predicted to be located in nucleus. Is expressed in head neurons. [provided by Alliance of Genome Resources, Apr 2022]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
npax-1
M02427_2.00		 Caenorhabditis elegans
NBTGGAACRN
NYGTTCCAVN		 PBM
Weirauch et al.(2014)
pTH9054		 (Direct) (Direct)

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
For this family, TFs with SR scores > 0.700 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M02427_2.00 Paired box 7 108

DNA Binding Domains

Protein ID Domain From To Sequence
F21D12.5 Paired box 61 162

Links

Other Paired box family TFs
Other Caenorhabditis elegans TFs

4 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
CRE26142 Caenorhabditis remanei CRE26142 I 0.889
CBG13139 Caenorhabditis briggsae CBG13139 I 0.869
CBN13224 Caenorhabditis brenneri CBN13224 I 0.859
CJA40106 Caenorhabditis japonica CJA40106 N 0.798