Pavir.Ha01929 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Ha01929 T324228_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ha01929.1.p Sigma 70 1 71
Pavir.Ha01929.2.p Sigma 70 1 71

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OB08G17050 Oryza brachyantha OB08G17050 N 0.986
OPUNC08G07030 Oryza punctata OPUNC08G07030 N 0.986
Si034994m.g Setaria italica Si034994m.g N 0.986
Pavir.Ib04452 Panicum virgatum Pavir.Ib04452 N 0.986
ORGLA08G0064000 Oryza glaberrima ORGLA08G0064000 N 0.972
BGIOSGA028267 Oryza indica BGIOSGA028267 N 0.972
OS08G0242800 Oryza sativa OS08G0242800 N 0.972
Sb01g000390 Sorghum bicolor Sb01g000390 N 0.972
OMERI03G18460 Oryza meridionalis OMERI03G18460 N 0.972
ORUFI08G08440 Oryza rufipogon ORUFI08G08440 N 0.972
ONIVA08G08070 Oryza nivara ONIVA08G08070 N 0.972
OLONG_007958 Oryza longistaminata OLONG_007958 N 0.972
OBART08G07320 Oryza barthii OBART08G07320 N 0.972
GRMZM2G144196 Zea mays GRMZM2G144196 N 0.972
OGLUM08G08160 Oryza glumaepatula OGLUM08G08160 N 0.972
Pavir.Ia00050 Panicum virgatum Pavir.Ia00050 N 0.958
LPERR08G06520 Leersia perrieri LPERR08G06520 N 0.958
TRIUR3_06257 Triticum urartu TRIUR3_06257 N 0.930
F775_07378 Aegilops tauschii F775_07378 N 0.930
BRADI1G00750 Brachypodium distachyon BRADI1G00750 N 0.930
Traes_5DL_8DC4CC983 Triticum aestivum Traes_5DL_8DC4CC983 N 0.930
Traes_4AL_A0565AC4C Triticum aestivum Traes_4AL_A0565AC4C N 0.930
Traes_5BL_B1F704307 Triticum aestivum Traes_5BL_B1F704307 N 0.930
MLOC_4725 Hordeum vulgare MLOC_4725 N 0.930
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.732
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.703