Pavir.Ia00050 (Panicum virgatum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Pavir.Ia00050 T324230_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ia00050.1.p Sigma 70 322 392
Pavir.Ia00050.2.p Sigma 70 322 392

Links

Other Sigma 70 family TFs
Other Panicum virgatum TFs

27 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
OPUNC08G07030 Oryza punctata OPUNC08G07030 N 0.972
Si034994m.g Setaria italica Si034994m.g N 0.972
OB08G17050 Oryza brachyantha OB08G17050 N 0.972
Pavir.Ib04452 Panicum virgatum Pavir.Ib04452 N 0.972
ORGLA08G0064000 Oryza glaberrima ORGLA08G0064000 N 0.958
BGIOSGA028267 Oryza indica BGIOSGA028267 N 0.958
Sb01g000390 Sorghum bicolor Sb01g000390 N 0.958
Pavir.Ha01929 Panicum virgatum Pavir.Ha01929 N 0.958
OMERI03G18460 Oryza meridionalis OMERI03G18460 N 0.958
OS08G0242800 Oryza sativa OS08G0242800 N 0.958
ORUFI08G08440 Oryza rufipogon ORUFI08G08440 N 0.958
ONIVA08G08070 Oryza nivara ONIVA08G08070 N 0.958
OLONG_007958 Oryza longistaminata OLONG_007958 N 0.958
OBART08G07320 Oryza barthii OBART08G07320 N 0.958
GRMZM2G144196 Zea mays GRMZM2G144196 N 0.958
OGLUM08G08160 Oryza glumaepatula OGLUM08G08160 N 0.958
LPERR08G06520 Leersia perrieri LPERR08G06520 N 0.944
Traes_5DL_8DC4CC983 Triticum aestivum Traes_5DL_8DC4CC983 N 0.915
TRIUR3_06257 Triticum urartu TRIUR3_06257 N 0.915
Traes_5BL_B1F704307 Triticum aestivum Traes_5BL_B1F704307 N 0.915
BRADI1G00750 Brachypodium distachyon BRADI1G00750 N 0.915
MLOC_4725 Hordeum vulgare MLOC_4725 N 0.915
F775_07378 Aegilops tauschii F775_07378 N 0.915
Traes_4AL_A0565AC4C Triticum aestivum Traes_4AL_A0565AC4C N 0.915
GSMUA_Achr11G17050_001 Musa acuminata GSMUA_Achr11G17050_001 N 0.718
GSMUA_Achr4G30300_001 Musa acuminata GSMUA_Achr4G30300_001 N 0.703