CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
ubtf.L
(
Xenopus laevis
)
Sox
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00505 (HMG_box)
IPR000910
XB-GENE-6254049
T335098_2.00
Misc (2018-Jan-19)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CAA40487
Sox
112
180
PKKPLTPYFRFFMEKRAKYAKLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKLEFERNLARFR
CAA40487
Sox
196
264
PEKPKTPQQLWYNHERKVYLKLHADASTKDVKDALGKQWSQLTDKKRLKWIHKALEQRKQYEGIMREYM
CAA40487
Sox
298
361
TKPPPNSYSMYCAELMANMKDVPSTERMVLCSQRWKLLSQKEKDAYNKKCEQRKKDYEVELMRF
CAA40487
Sox
425
467
DRAKALKSMEGTWLNMEKKEKIMWIKKAAEDQKRYERELSDMR
CAA40487
Sox
486
552
KKAPMNGYQKFSQELLSNGELNHLPLKERMVEIGSRWHRISPSQKDYYKKLAEDQQRVYRTQFDTWM
Links
Other
Sox
family TFs
Other
Xenopus laevis
TFs
10 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
1715211A
Xenopus laevis
1715211A
N
0.716
ENSXMAG00000012822
Xiphophorus maculatus
ENSXMAG00000012822
N
0.555
ENSONIG00000014037
Oreochromis niloticus
ENSONIG00000014037
N
0.549
ubtfl
Tetraodon nigroviridis
ENSTNIG00000003066
N
0.549
ubtfl
Danio rerio
ENSDARG00000038780
N
0.547
ubtfl
Takifugu rubripes
ENSTRUG00000009527
N
0.547
ubtfl
Gasterosteus aculeatus
ENSGACG00000001504
N
0.545
ENSGMOG00000009475
Gadus morhua
ENSGMOG00000009475
N
0.539
ENSLACG00000008118
Latimeria chalumnae
ENSLACG00000008118
N
0.473
ENSLOCG00000010224
Lepisosteus oculatus
ENSLOCG00000010224
N
0.433